| 1 | #!/bin/bash |
|---|
| 2 | # Default options |
|---|
| 3 | # |
|---|
| 4 | # |
|---|
| 5 | # |
|---|
| 6 | date |
|---|
| 7 | #### 1 Set up the compiling options |
|---|
| 8 | #### Define some directories |
|---|
| 9 | submitdir=$( pwd ) |
|---|
| 10 | modipsl=$submitdir/../.. |
|---|
| 11 | arch_path=$submitdir/ARCH |
|---|
| 12 | mysrc_path=$submitdir/SOURCES |
|---|
| 13 | export ROOT=$modipsl/modeles/DYNAMICO |
|---|
| 14 | #### Set default options |
|---|
| 15 | # Resolution if compiling LMDZ in regular mode without DYNAMICO |
|---|
| 16 | # Use for example following "./compile_icolmdzor.sh -regular_latlon 144x142x79" |
|---|
| 17 | regular_latlon=no |
|---|
| 18 | # Atmospheric resolution, for LMDZ/ORCHIDEE in regular mode |
|---|
| 19 | resol_atm=144x142x79 |
|---|
| 20 | # Coupled with ocean biogeochemistry (y/n) |
|---|
| 21 | nemotop=y |
|---|
| 22 | # Optimization mode |
|---|
| 23 | # optmode=prod/dev/debug |
|---|
| 24 | optmode=prod |
|---|
| 25 | # Resolution if compiling LMDZ in regular mode without DYNAMICO |
|---|
| 26 | # Use for example following "./compile_icolmdzor.sh -regular_latlon 144x142x79" |
|---|
| 27 | regular_latlon=no |
|---|
| 28 | # fcm_arch |
|---|
| 29 | fcm_arch=default |
|---|
| 30 | # Default values to be overritten |
|---|
| 31 | parallel=mpi_omp |
|---|
| 32 | export fcm_arch parallel xios |
|---|
| 33 | full_flag="" |
|---|
| 34 | full_nemo=n |
|---|
| 35 | full_inca="" |
|---|
| 36 | full_xios="" |
|---|
| 37 | full_lmdz="" |
|---|
| 38 | full_orch="" |
|---|
| 39 | full_dyna="" |
|---|
| 40 | # choose radiative code compilation option |
|---|
| 41 | rad=rrtm |
|---|
| 42 | opt_rad="" |
|---|
| 43 | #choose chemistry inca configuration |
|---|
| 44 | optchimie=GES |
|---|
| 45 | |
|---|
| 46 | # orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables. |
|---|
| 47 | # orchcomp is the key word needed for LMDZ for the compilation of coherent interface. Only used internal to the compilation script. |
|---|
| 48 | orchversion=orch22 |
|---|
| 49 | orchcomp=orchidee2.1 |
|---|
| 50 | |
|---|
| 51 | # Default netcdf_lib is used for XIOS but can be change by argument |
|---|
| 52 | netcdf_lib="" |
|---|
| 53 | |
|---|
| 54 | # Output text file for compilation of each component |
|---|
| 55 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
|---|
| 56 | outfile=$submitdir/out_compile_ipslcm7.$datestr |
|---|
| 57 | echo > $outfile |
|---|
| 58 | echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo |
|---|
| 59 | |
|---|
| 60 | |
|---|
| 61 | echo "create out_compile_ipslcm7 link " |
|---|
| 62 | rm -f out_compile_ipslcm7 |
|---|
| 63 | ln -s ${outfile} out_compile_ipslcm7 |
|---|
| 64 | |
|---|
| 65 | |
|---|
| 66 | |
|---|
| 67 | #### Read arguments |
|---|
| 68 | # Loop over all arguments to modify default set up |
|---|
| 69 | while (($# > 0)) ; do |
|---|
| 70 | case $1 in |
|---|
| 71 | "-h") cat <<end_help |
|---|
| 72 | ######################################################################## |
|---|
| 73 | # Usage of the script compile_ipslcm7.sh |
|---|
| 74 | # |
|---|
| 75 | ######################################################################## |
|---|
| 76 | |
|---|
| 77 | ./compile_ipslcm7.sh [Options] |
|---|
| 78 | |
|---|
| 79 | |
|---|
| 80 | Options: [-full] Full recompilation of all components. This option can be added to all other options. |
|---|
| 81 | [-cleannemo] Full recompilation of NEMO component only. |
|---|
| 82 | [-regular_latlon] |
|---|
| 83 | [-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod. |
|---|
| 84 | |
|---|
| 85 | |
|---|
| 86 | Example 1: Default compilation of IPSLCM7 for resolution LR |
|---|
| 87 | (Resolution atmos: nbp40 ) |
|---|
| 88 | ./compile_ipslcm7.sh |
|---|
| 89 | |
|---|
| 90 | Example 2: Default resolution (LR) compiled in debug mode |
|---|
| 91 | ./compile_ipslcm7.sh -debug |
|---|
| 92 | |
|---|
| 93 | Example 3: Default compilation with full recompilation of all components. No clean is needed. |
|---|
| 94 | ./compile_ipslcm7.sh -full |
|---|
| 95 | |
|---|
| 96 | Example 4: Compilation of LMDZ in regular lat-lon for dimension 144x142x79. |
|---|
| 97 | The dimension can be changed to any other 3d dimension. DYNAMICO is also compiled as default. |
|---|
| 98 | ./compile_ipslcm7.sh -regular_latlon 144x142x79 |
|---|
| 99 | |
|---|
| 100 | Example 5: Compiltion of ORCHIDEE_trunk version |
|---|
| 101 | Note that for compiling ORCHIDEE trunk you must first have extracted ORCHIDEE_trunk folder in modeles. |
|---|
| 102 | modeles/ORCHIDEE_2_2 folder can be kept at the same time. |
|---|
| 103 | ./compile_ipslcm7.sh -orch4 |
|---|
| 104 | ./compile_ipslcm7.sh -regular_latlon 144x142x79 -orch4 |
|---|
| 105 | |
|---|
| 106 | |
|---|
| 107 | Example 6: compilation of a specific chemistry for INCA (default is GES) |
|---|
| 108 | ./compile_ipslcm7.sh -chimie NMHC_AER_S |
|---|
| 109 | |
|---|
| 110 | end_help |
|---|
| 111 | exit;; |
|---|
| 112 | |
|---|
| 113 | "-parallel") parallel=$2 ; shift ; shift ;; |
|---|
| 114 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
|---|
| 115 | "-debug") optmode=debug ; shift ;; |
|---|
| 116 | "-dev") optmode=dev ; shift ;; |
|---|
| 117 | "-prod") optmode=prod ; shift ;; |
|---|
| 118 | "-regular_latlon") regular_latlon=yes ; resol_atm=$2 ; shift ; shift ;; |
|---|
| 119 | "-full") full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; shift ;; |
|---|
| 120 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
|---|
| 121 | "-full_lmdz") full_lmdz="-full" ; shift ;; |
|---|
| 122 | "-full_orch") full_orch="-full" ; shift ;; |
|---|
| 123 | "-full_nemo") full_nemo=y ; shift ;; |
|---|
| 124 | "-full_inca") full_inca="-clean"; shift ;; |
|---|
| 125 | "-full_dyna") full_dyna="-full" ; shift ;; |
|---|
| 126 | "-cleannemo") full_nemo=y ; shift ;; |
|---|
| 127 | "-rad") rad=$2; shift ; shift ;; |
|---|
| 128 | "-orch22") orchversion="orch22"; orchcomp=orchidee2.1; shift ;; |
|---|
| 129 | "-orch4") orchversion="orch4"; orchcomp=orchideetrunk; shift ;; |
|---|
| 130 | "-chimie") optchimie=$2; shift ; shift;; |
|---|
| 131 | *) echo "unknown option "$1" , exiting..." ; exit |
|---|
| 132 | esac |
|---|
| 133 | done |
|---|
| 134 | |
|---|
| 135 | echo "Following options are set in current compiling:" >> $outfile |
|---|
| 136 | echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile |
|---|
| 137 | echo " resol_atm=${resol_atm}, resol_oce=${resol_oce}, icemodel=${icemodel}, nemotop=${nemotop}" >> $outfile |
|---|
| 138 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
|---|
| 139 | echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna" >> $outfile |
|---|
| 140 | echo >> $outfile |
|---|
| 141 | |
|---|
| 142 | ### Read host dependent default values |
|---|
| 143 | ### These variables will not be changed if they were set as argument |
|---|
| 144 | ###./host.sh $host |
|---|
| 145 | # Later : Following lines should be set in host.sh file |
|---|
| 146 | # begin host.sh |
|---|
| 147 | if [ $fcm_arch == default ] ; then |
|---|
| 148 | # Find out current host and source specific paths and commands for the host |
|---|
| 149 | case $( hostname -s ) in |
|---|
| 150 | jean-zay*) |
|---|
| 151 | fcm_arch=X64_JEANZAY;; |
|---|
| 152 | irene170|irene171|irene190|irene191|irene192|irene193) |
|---|
| 153 | fcm_arch=X64_IRENE;; |
|---|
| 154 | irene172|irene173|irene194|irene195) |
|---|
| 155 | fcm_arch=X64_IRENE-AMD;; |
|---|
| 156 | asterix*|obelix*) |
|---|
| 157 | fcm_arch=ifort_LSCE |
|---|
| 158 | if [ "${parallel}" == "mpi_omp" ] ; then |
|---|
| 159 | echo "Warning!! Currently at Obelix hybrid mode is not possible." |
|---|
| 160 | echo " Option -parallel mpi_omp is now changed to -parallel mpi" |
|---|
| 161 | echo "" |
|---|
| 162 | parallel=mpi |
|---|
| 163 | else |
|---|
| 164 | echo "You used -parallel" $parallel |
|---|
| 165 | fi ;; |
|---|
| 166 | spirit*) |
|---|
| 167 | fcm_arch=ifort_MESOIPSL;; |
|---|
| 168 | ciclad*|climserv*|loholt*|camelot*) |
|---|
| 169 | fcm_arch=ifort_CICLAD;; |
|---|
| 170 | *) |
|---|
| 171 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
|---|
| 172 | echo Exit now. |
|---|
| 173 | exit |
|---|
| 174 | esac |
|---|
| 175 | fi |
|---|
| 176 | |
|---|
| 177 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
|---|
| 178 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
|---|
| 179 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
|---|
| 180 | echo >> $outfile |
|---|
| 181 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
|---|
| 182 | echo "Note that this new environement might be kept after compilation." |
|---|
| 183 | echo "If this is the case, source again your personal environment after compilation." |
|---|
| 184 | echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile |
|---|
| 185 | module list >> $outfile 2>&1 |
|---|
| 186 | svn_version=$(module list -t | grep subversion) |
|---|
| 187 | |
|---|
| 188 | # Make a link to this file, to be used also in config.card |
|---|
| 189 | rm -f ARCH/arch.env |
|---|
| 190 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
|---|
| 191 | |
|---|
| 192 | # Source the file |
|---|
| 193 | source ARCH/arch.env >> $outfile 2>&1 |
|---|
| 194 | if [ X$svn_version != X ] ; then |
|---|
| 195 | module load ${svn_version} |
|---|
| 196 | fi |
|---|
| 197 | echo >> $outfile |
|---|
| 198 | echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile |
|---|
| 199 | module list >> $outfile 2>&1 |
|---|
| 200 | fi |
|---|
| 201 | |
|---|
| 202 | |
|---|
| 203 | #### Clean if full_orch |
|---|
| 204 | # If full recompilation of ORCHIDEE then first clean modipsl/lib folder |
|---|
| 205 | if [ X${full_orch} == X"-full" ] ; then |
|---|
| 206 | rm -f $modipsl/lib/* |
|---|
| 207 | fi |
|---|
| 208 | |
|---|
| 209 | #### 2 Do the compilation |
|---|
| 210 | ## 2.1 Compile ioipsl |
|---|
| 211 | cd $modipsl/modeles/IOIPSL |
|---|
| 212 | echo; echo "NOW COMPILE IOIPSL" |
|---|
| 213 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
|---|
| 214 | |
|---|
| 215 | echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
|---|
| 216 | ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
|---|
| 217 | # Test if compiling succeded |
|---|
| 218 | if [[ $? != 0 ]] ; then |
|---|
| 219 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
|---|
| 220 | exit |
|---|
| 221 | fi |
|---|
| 222 | |
|---|
| 223 | ## 2.2 Compile oasis3-mct |
|---|
| 224 | cd $modipsl/oasis3-mct/util/make_dir |
|---|
| 225 | echo; echo "NOW COMPILE OASIS3-MCT" |
|---|
| 226 | echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile |
|---|
| 227 | cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc |
|---|
| 228 | |
|---|
| 229 | echo make -f TopMakefileOasis3 >> $outfile |
|---|
| 230 | make -f TopMakefileOasis3 >> $outfile 2>&1 |
|---|
| 231 | |
|---|
| 232 | |
|---|
| 233 | ## 2.3 Compile xios |
|---|
| 234 | cd $modipsl/modeles/XIOS |
|---|
| 235 | echo; echo "NOW COMPILE XIOS" |
|---|
| 236 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
|---|
| 237 | echo ./make_xios --use_oasis oasis3_mct --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
|---|
| 238 | ./make_xios --use_oasis oasis3_mct --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
|---|
| 239 | # Test if compiling succeded |
|---|
| 240 | if [[ $? != 0 ]] ; then |
|---|
| 241 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
|---|
| 242 | exit |
|---|
| 243 | fi |
|---|
| 244 | # Move executables to modipsl/bin |
|---|
| 245 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
|---|
| 246 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
|---|
| 247 | else |
|---|
| 248 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
|---|
| 249 | exit |
|---|
| 250 | fi |
|---|
| 251 | |
|---|
| 252 | |
|---|
| 253 | ## 2.4 Compile ORCHIDEE |
|---|
| 254 | # Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE. |
|---|
| 255 | # This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie. |
|---|
| 256 | cd $modipsl/modeles |
|---|
| 257 | rm -f ORCHIDEE |
|---|
| 258 | if [ $orchversion == orch22 ] ; then |
|---|
| 259 | ln -s ORCHIDEE_2_2 ORCHIDEE |
|---|
| 260 | cd $modipsl/modeles/ORCHIDEE_2_2 |
|---|
| 261 | echo; echo "NOW COMPILE ORCHIDEE_2_2" |
|---|
| 262 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2" >> $outfile |
|---|
| 263 | else |
|---|
| 264 | ln -s ORCHIDEE_trunk ORCHIDEE |
|---|
| 265 | cd $modipsl/modeles/ORCHIDEE_trunk |
|---|
| 266 | echo; echo "NOW COMPILE ORCHIDEE_trunk v4" |
|---|
| 267 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4" >> $outfile |
|---|
| 268 | fi |
|---|
| 269 | |
|---|
| 270 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
|---|
| 271 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
|---|
| 272 | # to ask question and wait for interactivly answer from the user. |
|---|
| 273 | if [ -f build/fcm.bld.lock ] ; then |
|---|
| 274 | echo >> $outfile |
|---|
| 275 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
|---|
| 276 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 277 | echo " The file will now be removed. " >> $outfile |
|---|
| 278 | echo >> $outfile |
|---|
| 279 | rm -f build/fcm.bld.lock |
|---|
| 280 | fi |
|---|
| 281 | |
|---|
| 282 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile |
|---|
| 283 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1 |
|---|
| 284 | # Test if compiling finished |
|---|
| 285 | if [[ $? != 0 ]] ; then |
|---|
| 286 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
|---|
| 287 | exit |
|---|
| 288 | fi |
|---|
| 289 | |
|---|
| 290 | # Rename exetubles for ORCHIDEE offline driver with suffix version |
|---|
| 291 | cd $modipsl/bin |
|---|
| 292 | if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi |
|---|
| 293 | if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi |
|---|
| 294 | |
|---|
| 295 | |
|---|
| 296 | ## 2.5 Compile NEMO |
|---|
| 297 | nemo_root=$modipsl/modeles/NEMO |
|---|
| 298 | cfg_ref=ORCA2_ICE_PISCES |
|---|
| 299 | cfg_wrk=ORCA_ICE_TRC |
|---|
| 300 | addkeys="key_oasis3 key_top key_si3 key_isf" |
|---|
| 301 | delkeys="" |
|---|
| 302 | |
|---|
| 303 | if [ ${nemotop} == n ] ; then |
|---|
| 304 | cfg_wrk=ORCA_ICE |
|---|
| 305 | delkeys="key_top" |
|---|
| 306 | fi |
|---|
| 307 | |
|---|
| 308 | if [ ${nemotop} == n ] ; then |
|---|
| 309 | echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" |
|---|
| 310 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" >> $outfile |
|---|
| 311 | else |
|---|
| 312 | echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" |
|---|
| 313 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" >> $outfile |
|---|
| 314 | fi |
|---|
| 315 | |
|---|
| 316 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
|---|
| 317 | echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. >> $outfile |
|---|
| 318 | echo >> $outfile |
|---|
| 319 | |
|---|
| 320 | cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. |
|---|
| 321 | |
|---|
| 322 | # creation of config |
|---|
| 323 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
|---|
| 324 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile |
|---|
| 325 | echo >> $outfile |
|---|
| 326 | cd $nemo_root |
|---|
| 327 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1 |
|---|
| 328 | |
|---|
| 329 | |
|---|
| 330 | # Copy of specfic source files |
|---|
| 331 | echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. >> $outfile |
|---|
| 332 | echo >> $outfile |
|---|
| 333 | cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. |
|---|
| 334 | |
|---|
| 335 | |
|---|
| 336 | if [ $full_nemo == y ] ; then |
|---|
| 337 | # To make a full compilation, first make a clean to remove all files produced during previous compilation |
|---|
| 338 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile |
|---|
| 339 | echo >> $outfile |
|---|
| 340 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile 2>&1 |
|---|
| 341 | fi |
|---|
| 342 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile |
|---|
| 343 | echo >> $outfile |
|---|
| 344 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile 2>&1 |
|---|
| 345 | |
|---|
| 346 | echo >> $outfile |
|---|
| 347 | echo "Move nemo executable to modipsl/bin" >> $outfile |
|---|
| 348 | echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 349 | ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 350 | echo >> $outfile |
|---|
| 351 | |
|---|
| 352 | if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then |
|---|
| 353 | mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe |
|---|
| 354 | else |
|---|
| 355 | echo "ERROR nemo.exe executable does not exist." |
|---|
| 356 | echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP" |
|---|
| 357 | exit |
|---|
| 358 | fi |
|---|
| 359 | |
|---|
| 360 | |
|---|
| 361 | ##2.6 Compile INCA |
|---|
| 362 | cd $modipsl/modeles/INCA |
|---|
| 363 | |
|---|
| 364 | echo; echo "NOW COMPILE INCA ${optchimie}" |
|---|
| 365 | echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile |
|---|
| 366 | ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile 2>&1 |
|---|
| 367 | |
|---|
| 368 | # Test if compiling finished |
|---|
| 369 | if [[ $? != 0 ]] ; then |
|---|
| 370 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 371 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 372 | exit |
|---|
| 373 | fi |
|---|
| 374 | |
|---|
| 375 | echo "Move inca.dat modipsl/bin" |
|---|
| 376 | if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then |
|---|
| 377 | mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ; |
|---|
| 378 | else |
|---|
| 379 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 380 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 381 | exit |
|---|
| 382 | fi |
|---|
| 383 | |
|---|
| 384 | echo "Move tracer.def to modipsl/bin" |
|---|
| 385 | if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then |
|---|
| 386 | mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ; |
|---|
| 387 | fi |
|---|
| 388 | |
|---|
| 389 | |
|---|
| 390 | |
|---|
| 391 | ## 2.7 Compile LMDZ |
|---|
| 392 | cd $modipsl/modeles/LMDZ |
|---|
| 393 | # Compile LMDZ as library to couple to DYNAMICO |
|---|
| 394 | echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" |
|---|
| 395 | echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile |
|---|
| 396 | |
|---|
| 397 | # Retrieve the final svn release number, needed for radiative code suffix of executable |
|---|
| 398 | lmdzsvn=`svnversion . | egrep -o "[0-9]+" | awk 'NR==1'` |
|---|
| 399 | # Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 |
|---|
| 400 | cp $mysrc_path/LMDZ/phylmd/*.*90 libf/phylmd/. |
|---|
| 401 | cp $mysrc_path/LMDZ/dyn3d_common/*.*90 libf/dyn3d_common/. |
|---|
| 402 | |
|---|
| 403 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 404 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 405 | # to ask question and wait for interactivly answer from the user. |
|---|
| 406 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 407 | echo >> $outfile |
|---|
| 408 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 409 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 410 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 411 | echo >> $outfile |
|---|
| 412 | rm -f libf/grid/dimensions.h |
|---|
| 413 | rm -f .lock |
|---|
| 414 | fi |
|---|
| 415 | |
|---|
| 416 | # Need to define the proper option for radiative code compilation. By default, we use rrtm |
|---|
| 417 | case $rad in |
|---|
| 418 | oldrad) opt_rad="" ;; |
|---|
| 419 | rrtm) if [ $lmdzsvn -le 4185 ] ; then opt_rad="-rrtm true" ; else opt_rad="-rad rrtm" ; fi ;; |
|---|
| 420 | ecrad) opt_rad="-rad ecrad" ;; |
|---|
| 421 | *) echo Only oldrad rrtm ecrad for rad option ; exit |
|---|
| 422 | esac |
|---|
| 423 | |
|---|
| 424 | if [ $lmdzsvn -le 4185 -a $rad = "ecrad" ] ; then echo "ecrad only available for LMDZ rev starting with 4186 " ; exit ; fi |
|---|
| 425 | |
|---|
| 426 | echo ./makelmdz_fcm -p lmd -c OMCT $opt_rad -$optmode -mem -parallel $parallel -libphy -v $orchcomp -chimie INCA -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile |
|---|
| 427 | ./makelmdz_fcm -p lmd -c OMCT $opt_rad -$optmode -mem -parallel $parallel -libphy -v $orchcomp -chimie INCA -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile 2>&1 |
|---|
| 428 | # Test if compiling finished |
|---|
| 429 | if [[ $? != 0 ]] ; then |
|---|
| 430 | echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP" |
|---|
| 431 | exit |
|---|
| 432 | fi |
|---|
| 433 | |
|---|
| 434 | |
|---|
| 435 | ## 2.8 Compile DYNAMICO |
|---|
| 436 | cd $modipsl/modeles/DYNAMICO |
|---|
| 437 | echo; echo "NOW COMPILE DYNAMICO " |
|---|
| 438 | echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile |
|---|
| 439 | |
|---|
| 440 | echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl -with_oasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile |
|---|
| 441 | ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl -with_oasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 442 | # Test if compiling finished |
|---|
| 443 | if [[ $? != 0 ]] ; then |
|---|
| 444 | echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP" |
|---|
| 445 | exit |
|---|
| 446 | fi |
|---|
| 447 | |
|---|
| 448 | |
|---|
| 449 | ## 2.9 Compile interface ICOSA_LMDZ |
|---|
| 450 | cd $modipsl/modeles/ICOSA_LMDZ |
|---|
| 451 | echo; echo "NOW COMPILE ICOSA_LMDZ " |
|---|
| 452 | echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile |
|---|
| 453 | |
|---|
| 454 | echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel -with_oasis -with_orchidee -with_inca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile |
|---|
| 455 | ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel -with_oasis -with_orchidee -with_inca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 456 | # Test if compiling finished |
|---|
| 457 | if [[ $? != 0 ]] ; then |
|---|
| 458 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP" |
|---|
| 459 | exit |
|---|
| 460 | fi |
|---|
| 461 | # Move executables to modipsl/bin |
|---|
| 462 | if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then |
|---|
| 463 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe |
|---|
| 464 | #create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 465 | cd $modipsl/bin |
|---|
| 466 | rm -f icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 467 | ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 468 | else |
|---|
| 469 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP" |
|---|
| 470 | exit |
|---|
| 471 | fi |
|---|
| 472 | |
|---|
| 473 | |
|---|
| 474 | |
|---|
| 475 | ## 2.10 Compile LMDZ for regular latlon configuration |
|---|
| 476 | if [ $regular_latlon = yes ] ; then |
|---|
| 477 | |
|---|
| 478 | cd $modipsl/modeles/LMDZ |
|---|
| 479 | # Compile LMDZ regular lat-lon exectuable |
|---|
| 480 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" |
|---|
| 481 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile |
|---|
| 482 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 483 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 484 | # to ask question and wait for interactivly answer from the user. |
|---|
| 485 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 486 | echo >> $outfile |
|---|
| 487 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 488 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 489 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 490 | echo >> $outfile |
|---|
| 491 | rm -f libf/grid/dimensions.h |
|---|
| 492 | rm -f .lock |
|---|
| 493 | fi |
|---|
| 494 | echo ./makelmdz_fcm -d ${resol_atm} -c OMCT -p lmd $opt_rad -$optmode -mem -parallel $parallel -chimie INCA -io xios -v $orchcomp -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile |
|---|
| 495 | ./makelmdz_fcm -d ${resol_atm} -c OMCT -p lmd $opt_rad -$optmode -mem -parallel $parallel -chimie INCA -io xios -v $orchcomp -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 |
|---|
| 496 | # Test if compiling finished |
|---|
| 497 | if [[ $? != 0 ]] ; then |
|---|
| 498 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 499 | exit |
|---|
| 500 | fi |
|---|
| 501 | |
|---|
| 502 | # Find executable suffix |
|---|
| 503 | suffix=_${resol_atm}_phylmd |
|---|
| 504 | if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi |
|---|
| 505 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
|---|
| 506 | suffix=${suffix}_seq_orch_inca.e |
|---|
| 507 | else |
|---|
| 508 | suffix=${suffix}_para_mem_orch_couple_inca.e |
|---|
| 509 | fi |
|---|
| 510 | echo gcm suffix = $suffix |
|---|
| 511 | |
|---|
| 512 | # Move executables to modipsl/bin folder |
|---|
| 513 | echo "Move gcm.e executable to modipsl/bin" |
|---|
| 514 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then |
|---|
| 515 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e |
|---|
| 516 | #create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 517 | cd $modipsl/bin |
|---|
| 518 | rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 519 | ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 520 | else |
|---|
| 521 | echo "ERROR gcm${suffix} executable does not exist." |
|---|
| 522 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 523 | exit |
|---|
| 524 | fi |
|---|
| 525 | |
|---|
| 526 | # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
|---|
| 527 | cd $modipsl/modeles/LMDZ |
|---|
| 528 | echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" |
|---|
| 529 | echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile |
|---|
| 530 | |
|---|
| 531 | echo ./makelmdz_fcm -d ${resol_atm} -c OMCT -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $orchcomp -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile |
|---|
| 532 | ./makelmdz_fcm -d ${resol_atm} -c OMCT -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $orchcomp -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 |
|---|
| 533 | # Test if compiling finished |
|---|
| 534 | if [[ $? != 0 ]] ; then |
|---|
| 535 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
|---|
| 536 | exit |
|---|
| 537 | fi |
|---|
| 538 | |
|---|
| 539 | |
|---|
| 540 | # Move executable ce0l to modipsl/bin folder |
|---|
| 541 | echo "Move ce0l executable to modipsl/bin" |
|---|
| 542 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then |
|---|
| 543 | mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e |
|---|
| 544 | else |
|---|
| 545 | echo "ERROR ce0l${suffix} executable does not exist." |
|---|
| 546 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 547 | exit |
|---|
| 548 | fi |
|---|
| 549 | fi |
|---|
| 550 | |
|---|
| 551 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
|---|
| 552 | echo ls -lrt modipsl/bin >> $outfile |
|---|
| 553 | ls -lrt $modipsl/bin >> $outfile |
|---|
| 554 | |
|---|
| 555 | echo; echo "ALL COMPILING FINISHED" ; echo |
|---|
| 556 | echo "Executables are found in modipsl/bin" |
|---|
| 557 | echo "Check that executable names correspond with the name set in config.card before launching the job" |
|---|
| 558 | echo ls -lrt modipsl/bin |
|---|
| 559 | ls -lrt $modipsl/bin |
|---|
| 560 | |
|---|
| 561 | date |
|---|
| 562 | |
|---|
| 563 | exit |
|---|
| 564 | |
|---|
| 565 | |
|---|
