Context Navigation

source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6658

Last change on this file since 6658 was 6655, checked in by jgipsl, 9 months ago
Correction in help
Property svn:executable set to ``*
File size: 26.0 KB

Rev	Line
[5479]	1	#!/bin/bash
	2	# Default options
	3	#
	4	#
	5	#
	6	date
	7	#### 1 Set up the compiling options
	8	#### Define some directories
	9	submitdir=$( pwd )
	10	modipsl=$submitdir/../..
	11	arch_path=$submitdir/ARCH
	12	mysrc_path=$submitdir/SOURCES
	13	export ROOT=$modipsl/modeles/DYNAMICO
[6641]	14	#### Set default options
	15	# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
[5479]	16	regular_latlon=no
[6641]	17	# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=yes
[5479]	18	resol_atm=144x142x79
	19	# Coupled with ocean biogeochemistry (y/n)
[6346]	20	nemotop=y
[5479]	21	# Optimization mode
	22	# optmode=prod/dev/debug
	23	optmode=prod
	24	# fcm_arch
	25	fcm_arch=default
	26	# Default values to be overritten
	27	parallel=mpi_omp
	28	export fcm_arch parallel xios
	29	full_flag=""
	30	full_nemo=n
	31	full_inca=""
	32	full_xios=""
	33	full_lmdz=""
	34	full_orch=""
	35	full_dyna=""
[6648]	36	full_oasis=n
[6296]	37	# choose radiative code compilation option
	38	rad=rrtm
	39	opt_rad=""
[6544]	40	#choose chemistry inca configuration
	41	optchimie=GES
[6462]	42
[6638]	43	# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
	44	subconfig=default
	45
[6462]	46	# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables.
	47	orchversion=orch22
	48
[5479]	49	# Default netcdf_lib is used for XIOS but can be change by argument
	50	netcdf_lib=""
	51
	52	# Output text file for compilation of each component
	53	datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
	54	outfile=$submitdir/out_compile_ipslcm7.$datestr
	55	echo > $outfile
	56	echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
	57
[6538]	58
	59	rm -f out_compile_ipslcm7
	60	ln -s ${outfile} out_compile_ipslcm7
	61
	62
[5479]	63	#### Read arguments
	64	# Loop over all arguments to modify default set up
	65	while (($# > 0)) ; do
	66	case $1 in
	67	"-h") cat <<end_help
	68	########################################################################
	69	# Usage of the script compile_ipslcm7.sh
	70	#
	71	########################################################################
	72
	73	./compile_ipslcm7.sh [Options]
	74
	75
	76	Options: [-full] Full recompilation of all components. This option can be added to all other options.
	77	[-cleannemo] Full recompilation of NEMO component only.
[6641]	78	[-regular_latlon] Activate compilation of LMDZ for regular latlon grid with default resol_atm size in addition to the icosahedric grid.
	79	[-resol_atm XXXxYYYxZZ] Define which regular grid to compile.
[5479]	80	[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
[6638]	81	[-subconfig X] Set this option if you want to compile a sub-configuration. X can be: ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA or LMDZOR.
	82	If this option is not set, all extracted components are compiled.
[5479]	83
	84	Example 1: Default compilation of IPSLCM7 for resolution LR
[6346]	85	(Resolution atmos: nbp40 )
[5479]	86	./compile_ipslcm7.sh
	87
[6346]	88	Example 2: Default resolution (LR) compiled in debug mode
[5479]	89	./compile_ipslcm7.sh -debug
	90
	91	Example 3: Default compilation with full recompilation of all components. No clean is needed.
	92	./compile_ipslcm7.sh -full
	93
[6641]	94	Example 4: Compilation of LMDZ in regular lat-lon for default dimension 144x142x79.
	95	./compile_ipslcm7.sh -regular_latlon
	96	Activate regular lat-lon compilation and change resolution to 144x142x95
	97	./compile_ipslcm7.sh -resol_atm 144x142x95
[5479]	98
[6462]	99	Example 5: Compiltion of ORCHIDEE_trunk version
	100	Note that for compiling ORCHIDEE trunk you must first have extracted ORCHIDEE_trunk folder in modeles.
	101	modeles/ORCHIDEE_2_2 folder can be kept at the same time.
	102	./compile_ipslcm7.sh -orch4
[6655]	103	./compile_ipslcm7.sh -regular_latlon -orch4
[6462]	104
[6544]	105
	106	Example 6: compilation of a specific chemistry for INCA (default is GES)
	107	./compile_ipslcm7.sh -chimie NMHC_AER_S
	108
[5479]	109	end_help
	110	exit;;
	111
	112	"-parallel") parallel=$2 ; shift ; shift ;;
	113	"-arch") fcm_arch="$2" ; shift ; shift ;;
	114	"-debug") optmode=debug ; shift ;;
	115	"-dev") optmode=dev ; shift ;;
	116	"-prod") optmode=prod ; shift ;;
[6641]	117	"-regular_latlon") regular_latlon=yes ; shift ;;
	118	"-resol_atm") regular_latlon=yes ; resol_atm=$2 ; shift ; shift ;;
[6638]	119	"-subconfig") subconfig=$2 ; shift ; shift ;;
[6649]	120	"-full") full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
[5479]	121	"-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full
	122	"-full_lmdz") full_lmdz="-full" ; shift ;;
	123	"-full_orch") full_orch="-full" ; shift ;;
	124	"-full_nemo") full_nemo=y ; shift ;;
	125	"-full_inca") full_inca="-clean"; shift ;;
[6648]	126	"-full_dyna") full_dyna="-full" ; shift ;;
	127	"-full_oasis") full_oasis=y ; shift ;;
[5479]	128	"-cleannemo") full_nemo=y ; shift ;;
[6296]	129	"-rad") rad=$2; shift ; shift ;;
[6640]	130	"-orch22") orchversion="orch22"; shift ;;
	131	"-orch4") orchversion="orch4"; shift ;;
[6544]	132	"-chimie") optchimie=$2; shift ; shift;;
[5479]	133	*) echo "unknown option "$1" , exiting..." ; exit
	134	esac
	135	done
	136
[6638]	137
	138	# Define which sub-configuration to compile. By default all extracted source components are compiled.
	139	source define_config.sh
	140
[5479]	141	echo "Following options are set in current compiling:" >> $outfile
	142	echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile
[6641]	143	echo " resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile
[5479]	144	echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile
[6648]	145	echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile
[6638]	146	echo " compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
[5479]	147	echo >> $outfile
	148
[6640]	149	### Verification of argument
	150	# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
	151	if [ $orchversion == orch22 ] ; then
	152	argorch=orchidee2.1
	153	elif [ $orchversion == orch4 ] ; then
	154	argorch=orchideetrunk
	155	else
	156	echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
	157	fi
[6638]	158
[5479]	159	### Read host dependent default values
	160	### These variables will not be changed if they were set as argument
	161	###./host.sh $host
	162	# Later : Following lines should be set in host.sh file
	163	# begin host.sh
	164	if [ $fcm_arch == default ] ; then
	165	# Find out current host and source specific paths and commands for the host
	166	case $( hostname -s ) in
	167	jean-zay*)
[6629]	168	if [[ $( hostname -s ) != "pp" ]] ; then
	169	echo "Warning! You MUST compile on jean-zay-pp."
	170	echo "EXIT"
	171	exit
	172	else
	173	fcm_arch=X64_JEANZAY
	174	fi ;;
[5479]	175	irene170\|irene171\|irene190\|irene191\|irene192\|irene193)
	176	fcm_arch=X64_IRENE;;
	177	irene172\|irene173\|irene194\|irene195)
	178	fcm_arch=X64_IRENE-AMD;;
	179	asterix\|obelix)
	180	fcm_arch=ifort_LSCE
	181	if [ "${parallel}" == "mpi_omp" ] ; then
	182	echo "Warning!! Currently at Obelix hybrid mode is not possible."
	183	echo " Option -parallel mpi_omp is now changed to -parallel mpi"
	184	echo ""
	185	parallel=mpi
	186	else
	187	echo "You used -parallel" $parallel
	188	fi ;;
[6296]	189	spirit*)
	190	fcm_arch=ifort_MESOIPSL;;
[5479]	191	ciclad\|climserv\|loholt\|camelot)
	192	fcm_arch=ifort_CICLAD;;
	193	*)
	194	echo Current host is not known. You must use option -arch to specify which architecuture files to use.
	195	echo Exit now.
	196	exit
	197	esac
	198	fi
	199
	200	# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
	201	# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
	202	if [ -f ARCH/arch-${fcm_arch}.env ] ; then
	203	echo >> $outfile
	204	echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
[6296]	205	echo "Note that this new environement might be kept after compilation."
	206	echo "If this is the case, source again your personal environment after compilation."
	207	echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile
	208	module list >> $outfile 2>&1
	209	svn_version=$(module list -t \| grep subversion)
	210
[5479]	211	# Make a link to this file, to be used also in config.card
	212	rm -f ARCH/arch.env
	213	ln -s arch-${fcm_arch}.env ARCH/arch.env
	214
	215	# Source the file
[6296]	216	source ARCH/arch.env >> $outfile 2>&1
	217	if [ X$svn_version != X ] ; then
	218	module load ${svn_version}
	219	fi
	220	echo >> $outfile
	221	echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile
	222	module list >> $outfile 2>&1
[5479]	223	fi
	224
[6462]	225
	226	#### Clean if full_orch
	227	# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
	228	if [ X${full_orch} == X"-full" ] ; then
	229	rm -f $modipsl/lib/*
	230	fi
	231
[5479]	232	#### 2 Do the compilation
	233	## 2.1 Compile ioipsl
	234	cd $modipsl/modeles/IOIPSL
	235	echo; echo "NOW COMPILE IOIPSL"
	236	echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile
	237
	238	echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile
	239	./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1
	240	# Test if compiling succeded
	241	if [[ $? != 0 ]] ; then
	242	echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
	243	exit
	244	fi
	245
[6638]	246	if [ $compoasis == y ] ; then
[5479]	247	## 2.2 Compile oasis3-mct
[6648]	248	if [ $full_oasis == y ] ; then
	249	rm -rf $modipsl/oasis3-mct/BLD
	250	fi
[5479]	251	cd $modipsl/oasis3-mct/util/make_dir
	252	echo; echo "NOW COMPILE OASIS3-MCT"
	253	echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile
	254	cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
	255
	256	echo make -f TopMakefileOasis3 >> $outfile
	257	make -f TopMakefileOasis3 >> $outfile 2>&1
	258
[6638]	259	else
	260	echo ; echo No compilation of OASIS
	261	fi
[5479]	262
	263	## 2.3 Compile xios
	264	cd $modipsl/modeles/XIOS
	265	echo; echo "NOW COMPILE XIOS"
	266	echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile
[6638]	267	if [ $compoasis == y ] ; then
	268	argoasis="--use_oasis oasis3_mct "
	269	else
	270	argoasis=" "
	271	fi
	272	echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile
	273	./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1
[5479]	274	# Test if compiling succeded
	275	if [[ $? != 0 ]] ; then
	276	echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
	277	exit
	278	fi
	279	# Move executables to modipsl/bin
	280	if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
	281	mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
	282	else
	283	echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
	284	exit
	285	fi
	286
	287
[6462]	288	## 2.4 Compile ORCHIDEE
	289	# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
	290	# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
	291	cd $modipsl/modeles
	292	rm -f ORCHIDEE
	293	if [ $orchversion == orch22 ] ; then
	294	ln -s ORCHIDEE_2_2 ORCHIDEE
	295	cd $modipsl/modeles/ORCHIDEE_2_2
	296	echo; echo "NOW COMPILE ORCHIDEE_2_2"
	297	echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2" >> $outfile
	298	else
	299	ln -s ORCHIDEE_trunk ORCHIDEE
	300	cd $modipsl/modeles/ORCHIDEE_trunk
	301	echo; echo "NOW COMPILE ORCHIDEE_trunk v4"
	302	echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4" >> $outfile
	303	fi
[5479]	304
	305	# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
	306	# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
	307	# to ask question and wait for interactivly answer from the user.
	308	if [ -f build/fcm.bld.lock ] ; then
	309	echo >> $outfile
	310	echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile
	311	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
	312	echo " The file will now be removed. " >> $outfile
	313	echo >> $outfile
	314	rm -f build/fcm.bld.lock
	315	fi
	316
[6462]	317	echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile
	318	./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1
[5479]	319	# Test if compiling finished
	320	if [[ $? != 0 ]] ; then
	321	echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
	322	exit
	323	fi
	324
[6462]	325	# Rename exetubles for ORCHIDEE offline driver with suffix version
	326	cd $modipsl/bin
	327	if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi
	328	if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi
[5479]	329
[6462]	330
[6639]	331	## 2.5 Compile NEMO
[6638]	332	if [ $compnemo == y ] ; then
[6639]	333	nemo_root=$modipsl/modeles/NEMO
	334	cfg_ref=ORCA2_ICE_PISCES
	335	cfg_wrk=ORCA_ICE_TRC
	336	addkeys="key_oasis3 key_top key_si3 key_isf"
	337	delkeys=""
	338
	339	if [ ${nemotop} == n ] ; then
	340	cfg_wrk=ORCA_ICE
	341	delkeys="key_top"
	342	fi
	343
	344	if [ ${nemotop} == n ] ; then
	345	echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
	346	echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" >> $outfile
	347	else
	348	echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
	349	echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" >> $outfile
	350	fi
	351
	352	echo >> $outfile ; echo cd $nemo_root >> $outfile
	353	echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. >> $outfile
	354	echo >> $outfile
	355
	356	cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
	357
	358	# creation of config
	359	echo >> $outfile ; echo cd $nemo_root >> $outfile
	360	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile
	361	echo >> $outfile
	362	cd $nemo_root
	363	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1
	364
	365
	366	# Copy of specfic source files
	367	echo >> $outfile ; echo cp $mysrc_path/NEMO/.90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. >> $outfile
	368	echo >> $outfile
	369	cp $mysrc_path/NEMO/.90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
	370
	371
	372	if [ $full_nemo == y ] ; then
	373	# To make a full compilation, first make a clean to remove all files produced during previous compilation
	374	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile
	375	echo >> $outfile
	376	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile 2>&1
	377	fi
	378	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile
	379	echo >> $outfile
	380	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile 2>&1
	381
	382	echo >> $outfile
	383	echo "Move nemo executable to modipsl/bin" >> $outfile
	384	echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile
	385	ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile
	386	echo >> $outfile
	387
	388	if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
	389	mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
	390	else
	391	echo "ERROR nemo.exe executable does not exist."
	392	echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
	393	exit
	394	fi
	395
[5479]	396	else
[6639]	397	echo ; echo No compilation of NEMO
[5479]	398	fi
[6346]	399
[6639]	400	##2.6 Compile INCA
[6638]	401	if [ $compinca == y ] ; then
[6544]	402	cd $modipsl/modeles/INCA
[6639]	403
[6544]	404	echo; echo "NOW COMPILE INCA ${optchimie}"
[6588]	405	echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}" >> $outfile
	406
[6649]	407	echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile
	408	./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
[6639]	409
[6544]	410	# Test if compiling finished
	411	if [[ $? != 0 ]] ; then
	412	echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
	413	echo "ALL INFORMATION IN FILE $outfile"
	414	exit
	415	fi
[6639]	416
[6544]	417	echo "Move inca.dat modipsl/bin"
	418	if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then
	419	mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
	420	else
	421	echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
	422	echo "ALL INFORMATION IN FILE $outfile"
	423	exit
	424	fi
[6639]	425
[6544]	426	echo "Move tracer.def to modipsl/bin"
	427	if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then
	428	mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
	429	fi
[6639]	430
[6638]	431	else
[6639]	432	echo ; echo No compilation of INCA
[6638]	433	fi
[6544]	434
	435	## 2.7 Compile LMDZ
[5479]	436	cd $modipsl/modeles/LMDZ
	437	# Compile LMDZ as library to couple to DYNAMICO
[6639]	438	if [ $compdyna == y ] ; then
	439	echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
	440	echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile
	441
	442	# Retrieve the final svn release number, needed for radiative code suffix of executable
	443	lmdzsvn=`svnversion . \| egrep -o "[0-9]+" \| awk 'NR==1'`
	444	# Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7
	445	cp $mysrc_path/LMDZ/phylmd/.90 libf/phylmd/.
	446	cp $mysrc_path/LMDZ/dyn3d_common/.90 libf/dyn3d_common/.
	447
	448	# Check if the compilation of LMDZ was previsouly interupted prematured.
	449	# In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
	450	# to ask question and wait for interactivly answer from the user.
	451	if [ -f libf/grid/dimensions.h ] \|\| [ -f .lock ] ; then
	452	echo >> $outfile
	453	echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile
	454	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
	455	echo " The files dimension.h and .lock will now be removed. " >> $outfile
	456	echo >> $outfile
	457	rm -f libf/grid/dimensions.h
	458	rm -f .lock
	459	fi
	460
	461	# Need to define the proper option for radiative code compilation. By default, we use rrtm
	462	case $rad in
	463	oldrad) opt_rad="" ;;
	464	rrtm) if [ $lmdzsvn -le 4185 ] ; then opt_rad="-rrtm true" ; else opt_rad="-rad rrtm" ; fi ;;
	465	ecrad) opt_rad="-rad ecrad" ;;
	466	*) echo Only oldrad rrtm ecrad for rad option ; exit
	467	esac
	468
	469	if [ $lmdzsvn -le 4185 -a $rad = "ecrad" ] ; then echo "ecrad only available for LMDZ rev starting with 4186 " ; exit ; fi
	470
	471	if [ $compinca == y ] ; then
	472	arginca="-chimie INCA "
	473	else
	474	arginca=" "
	475	fi
	476
	477	if [ $compoasis == y ] ; then
	478	argoasis="-c OMCT "
	479	else
	480	argoasis=" "
	481	fi
[6640]	482
	483	echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile
	484	./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile 2>&1
[6639]	485
	486
	487	# Test if compiling finished
	488	if [[ $? != 0 ]] ; then
	489	echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
	490	exit
	491	fi
[5479]	492	fi
	493
	494
[6544]	495	## 2.8 Compile DYNAMICO
[6639]	496	if [ $compdyna == y ] ; then
	497	cd $modipsl/modeles/DYNAMICO
	498	echo; echo "NOW COMPILE DYNAMICO "
	499	echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile
	500
	501	if [ $compoasis == y ] ; then
	502	argoasis="-with_oasis "
	503	else
	504	argoasis=" "
	505	fi
	506	if [ $compinca == y ] ; then
	507	arginca="-with_inca "
	508	else
	509	arginca=" "
	510	fi
	511
	512
	513	echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile
	514	./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1
	515	# Test if compiling finished
	516	if [[ $? != 0 ]] ; then
	517	echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
	518	exit
	519	fi
[6638]	520	fi
[6639]	521
[6544]	522	## 2.9 Compile interface ICOSA_LMDZ
[6642]	523	if [ $compdyna == y ] ; then
[6639]	524	cd $modipsl/modeles/ICOSA_LMDZ
	525	echo; echo "NOW COMPILE ICOSA_LMDZ "
	526	echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile
	527
	528	echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile
	529	./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1
	530	# Test if compiling finished
	531	if [[ $? != 0 ]] ; then
	532	echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
	533	exit
	534	fi
	535	# Move executables to modipsl/bin
	536	if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
	537	if [ $compinca == y ] ; then
	538	mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
	539	# Create link to be use by IPSLCM and LMDZOR without any change in the executable name
	540	cd $modipsl/bin
	541	rm -f icosa_lmdz_${orchversion}_${optmode}.exe
	542	ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
	543	else
	544	mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
	545	fi
[6638]	546	else
[6639]	547	echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
	548	exit
[6638]	549	fi
[5479]	550	fi
	551
	552
[6544]	553	## 2.10 Compile LMDZ for regular latlon configuration
[5479]	554	if [ $regular_latlon = yes ] ; then
	555
	556	cd $modipsl/modeles/LMDZ
	557	# Compile LMDZ regular lat-lon exectuable
	558	echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
	559	echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile
	560	# Check if the compilation of LMDZ was previsouly interupted prematured.
	561	# In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
	562	# to ask question and wait for interactivly answer from the user.
	563	if [ -f libf/grid/dimensions.h ] \|\| [ -f .lock ] ; then
	564	echo >> $outfile
	565	echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile
	566	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
	567	echo " The files dimension.h and .lock will now be removed. " >> $outfile
	568	echo >> $outfile
	569	rm -f libf/grid/dimensions.h
	570	rm -f .lock
	571	fi
[6638]	572
	573	if [ $compinca == y ] ; then
	574	arginca="-chimie INCA"
	575	else
	576	arginca=""
	577	fi
	578
	579	if [ $compoasis == y ] ; then
	580	argoasis="-c OMCT"
	581	else
	582	argoasis=""
	583	fi
[6640]	584	echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile
	585	./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1
[5479]	586	# Test if compiling finished
	587	if [[ $? != 0 ]] ; then
	588	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
	589	exit
	590	fi
	591
[6457]	592	# Find executable suffix
	593	suffix=_${resol_atm}_phylmd
	594	if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
	595	if [ $parallel == seq ] \|\| [ $parallel == none ] ; then
[6544]	596	suffix=${suffix}_seq_orch_inca.e
[6457]	597	else
[6638]	598	if [ $compoasis == y ] ; then
	599	suffix=${suffix}_para_mem_orch_couple
	600	else
	601	suffix=${suffix}_para_mem_orch
	602	fi
	603	if [ $compinca == y ] ; then
	604	suffix=${suffix}_inca.e
	605	else
	606	suffix=${suffix}.e
	607	fi
[6457]	608	fi
	609	echo gcm suffix = $suffix
	610
[6462]	611	# Move executables to modipsl/bin folder
[6457]	612	echo "Move gcm.e executable to modipsl/bin"
	613	if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then
[6638]	614	if [ $compinca == y ] ; then
	615	mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
	616	# Create link to be use by IPSLCM and LMDZOR without any change in the executable name
	617	cd $modipsl/bin
	618	rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
	619	ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
	620	else
	621	mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
	622	fi
[6457]	623	else
	624	echo "ERROR gcm${suffix} executable does not exist."
	625	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
	626	exit
[6462]	627	fi
	628
[6588]	629	# Find executable suffix
	630	suffix=_${resol_atm}_phylmd
	631	if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
	632	if [ $parallel == seq ] \|\| [ $parallel == none ] ; then
	633	suffix=${suffix}_seq_orch.e
	634	else
[6638]	635	if [ $compoasis == y ] ; then
	636	suffix=${suffix}_para_mem_orch_couple.e
	637	else
	638	suffix=${suffix}_para_mem_orch.e
	639	fi
[6588]	640	fi
	641	echo ce0l suffix = $suffix
[6638]	642
[5479]	643	# Compile ce0l initialization program for LMDZ regular lat-lon exectuable
[6544]	644	cd $modipsl/modeles/LMDZ
[5479]	645	echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
	646	echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile
	647
[6640]	648	echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile
	649	./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1
[5479]	650	# Test if compiling finished
	651	if [[ $? != 0 ]] ; then
	652	echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
	653	exit
	654	fi
[6462]	655
	656
[6457]	657	# Move executable ce0l to modipsl/bin folder
	658	echo "Move ce0l executable to modipsl/bin"
[5479]	659	if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then
	660	mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
	661	else
	662	echo "ERROR ce0l${suffix} executable does not exist."
	663	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
	664	exit
	665	fi
	666	fi
	667
	668	echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
	669	echo ls -lrt modipsl/bin >> $outfile
	670	ls -lrt $modipsl/bin >> $outfile
	671
	672	echo; echo "ALL COMPILING FINISHED" ; echo
	673	echo "Executables are found in modipsl/bin"
	674	echo "Check that executable names correspond with the name set in config.card before launching the job"
	675	echo ls -lrt modipsl/bin
	676	ls -lrt $modipsl/bin
	677
	678	date
	679
	680	exit
	681
	682

Note: See TracBrowser for help on using the repository browser.

Download in other formats: