source: CONFIG/UNIFORM/v6/LMDZREPR_v6/GENERAL/DRIVER/lmdz.driver @ 5682

Last change on this file since 5682 was 5608, checked in by falletti, 3 years ago

New configuration LMDZREPR_v6
File size: 29.6 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function ATM_Initialize
4{
5    IGCM_debug_PushStack "ATM_Initialize"
6
7    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
8
9    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
10
11    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
12    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
13    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
14    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
15
16    ##- LMDZ physics version
17    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
18    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
19        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
20    else
21        LMDZ_Physics=AP
22    fi
23    echo LMDZ physics version : ${LMDZ_Physics}
24
25    ##- Create_etat0_limit version
26    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
27    ##  This variable is only used in lmdz.card to choose input files.
28    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
29        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
30        CREATE=${lmdz_UserChoices_CREATE}
31        echo create_etat0_limit version : ${CREATE}
32    fi
33
34
35    ## - LMDZ choice of config.def file
36    ##   ConfType must be set in lmdz.card
37    ConfType=${lmdz_UserChoices_ConfType}
38
39    ##- LMDZ output level, to be set in lmdz.card
40    if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
41        # OutLevel is not set. Take default value low.
42        OutLevel=low
43    else
44        OutLevel=${lmdz_UserChoices_OutLevel}
45    fi
46
47    ##-- Output frequency purpose ....
48    ##--  Initialisation  ....
49    ok_mensuel=.FALSE.
50    ok_journe=.FALSE.
51    ok_hf=.FALSE.
52    ok_hf3h=.FALSE.
53    ok_hf3hm=.FALSE.
54    ok_stn=.FALSE.
55
56
57    case ${config_UserChoices_PeriodLength} in
58        1Y|1y|1M|1m) ok_mensuel=.TRUE. ;;
59        5D|5d|1D|1d) ok_journe=.TRUE. ;;
60    esac
61
62    for frequency in ${config_ATM_WriteFrequency} ; do
63        case ${frequency} in
64            1M|1m) ok_mensuel=.TRUE. ;;
65        esac
66        case ${frequency} in
67            5D|5d|1D|1d) ok_journe=.TRUE. ;;
68        esac
69        case ${frequency} in
70            HF|hf) ok_hf=.TRUE. ;;
71        esac
72        case ${frequency} in
73            HF3h|hf3h) ok_hf3h=.TRUE. ;;
74        esac
75        case ${frequency} in
76            HF3hm|hf3hm) ok_hf3hm=.TRUE. ;;
77        esac
78        case ${frequency} in
79            STN|stn) ok_stn=.TRUE. ;;
80        esac
81    done
82
83
84##  Read LMDZ_COSP_OK in lmdz.card
85    if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then
86        ##  LMDZ_COSP_OK=y, now read all other COSP variables
87        ##  Read LMDZ_COSP_monthly in lmdz.card
88        if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then
89            LMDZ_COSP_monthly=.TRUE.
90        else
91            LMDZ_COSP_monthly=.FALSE.
92        fi
93        ##  Read LMDZ_COSP_daily in lmdz.card
94        if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then
95            LMDZ_COSP_daily=.TRUE.
96        else
97            LMDZ_COSP_daily=.FALSE.
98        fi
99        ##  Read LMDZ_COSP_hf in lmdz.card
100        if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then
101            LMDZ_COSP_hf=.TRUE.
102        else
103            LMDZ_COSP_hf=.FALSE.
104        fi
105    else
106        # LMDZ_COSP_OK=n : All cosp output are deactivated
107        LMDZ_COSP_monthly=.FALSE.
108        LMDZ_COSP_daily=.FALSE.
109        LMDZ_COSP_hf=.FALSE.
110    fi 
111
112    ##  Read LMDZ_NMC_monthly in lmdz.card
113    if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then
114        LMDZ_NMC_monthly=.TRUE.
115    else
116        LMDZ_NMC_monthly=.FALSE.
117    fi
118   
119    ## Read LMDZ_NMC_daily in lmdz.card
120    if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then
121        LMDZ_NMC_daily=.TRUE.
122    else
123        LMDZ_NMC_daily=.FALSE.
124    fi
125   
126    ## Read LMDZ_NMC_hf in lmdz.card
127    if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then
128        LMDZ_NMC_hf=.TRUE.
129    else
130        LMDZ_NMC_hf=.FALSE.
131    fi
132   
133
134    IGCM_debug_PopStack "ATM_Initialize"
135}
136
137#-----------------------------------------------------------------
138function ATM_Update
139{
140    IGCM_debug_PushStack "ATM_Update"
141
142    ##-- GHG forcing :
143    ##   If forcing file exist in run directory, read values for the current year
144    ##   and set in config.def. If not use the default value set in config.def
145
146    # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
147    IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
148    IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
149    if [ -f SOLARANDVOLCANOES.txt ] ; then
150        value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
151        if [ X"${value}" = X ] ; then
152            # The grep returned empty variable, stop execution
153            IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
154            IGCM_debug_Verif_Exit
155        fi
156    else
157        value=DEFAULT
158    fi
159    IGCM_comp_modifyDefFile nonblocker config.def solaire $value
160
161    # Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file.
162    if [ -f Eccentricity.txt ] ; then
163        value=`grep Annee_${year} Eccentricity.txt | awk -F= '{print $2}'`
164        if [ X"${value}" = X ] ; then
165            # The grep returned empty variable, stop execution
166            IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year."
167            IGCM_debug_Verif_Exit
168        fi
169    else
170        value=DEFAULT
171    fi
172    IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value
173
174    # Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file.
175    if [ -f Obliquity.txt ] ; then
176        value=`grep Annee_${year} Obliquity.txt | awk -F= '{print $2}'`
177        if [ X"${value}" = X ] ; then
178            # The grep returned empty variable, stop execution
179            IGCM_debug_Exit "The file Obliquity.txt do not contain the current year."
180            IGCM_debug_Verif_Exit
181        fi
182    else
183        value=DEFAULT
184    fi
185    IGCM_comp_modifyDefFile nonblocker config.def R_incl $value
186
187    # Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file.
188    if [ -f Perihelie.txt ] ; then
189        value=`grep Annee_${year} Perihelie.txt | awk -F= '{print $2}'`
190        if [ X"${value}" = X ] ; then
191            # The grep returned empty variable, stop execution
192            IGCM_debug_Exit "The file Perihelie.txt do not contain the current year."
193            IGCM_debug_Verif_Exit
194        fi
195    else
196        value=DEFAULT
197    fi
198    IGCM_comp_modifyDefFile nonblocker config.def R_peri $value
199
200    # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
201    # Calculate co2_ppm_per as co2_ppm*4.
202    if [ -f CO2.txt ] ; then
203        value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
204        if [ X"${value}" = X ] ; then
205            # The grep returned empty variable, stop execution
206            IGCM_debug_Exit "The file CO2.txt do not contain the current year."
207            IGCM_debug_Verif_Exit
208        fi
209        value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'`
210    else
211        value=DEFAULT
212        value4=DEFAULT
213    fi
214    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
215    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
216
217
218    # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
219    if [ -f CH4.txt ] ; then
220        value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
221        if [ X"${value}" = X ] ; then
222            # The grep returned empty variable, stop execution
223            IGCM_debug_Exit "The file CH4.txt do not contain the current year."
224            IGCM_debug_Verif_Exit
225        fi
226    else
227        value=DEFAULT
228    fi
229    IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
230
231
232    # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
233    if [ -f N2O.txt ] ; then
234        value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
235        if [ X"${value}" = X ] ; then
236            # The grep returned empty variable, stop execution
237            IGCM_debug_Exit "The file N2O.txt do not contain the current year."
238            IGCM_debug_Verif_Exit
239        fi
240    else
241        value=DEFAULT
242    fi
243    IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
244
245    # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
246    if [ -f CFC11.txt ] ; then
247        value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
248        if [ X"${value}" = X ] ; then
249            # The grep returned empty variable, stop execution
250            IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
251            IGCM_debug_Verif_Exit
252        fi
253    else
254        value=DEFAULT
255    fi
256    IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
257
258
259    # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
260    if [ -f CFC12.txt ] ; then
261        value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
262        if [ X"${value}" = X ] ; then
263            # The grep returned empty variable, stop execution
264            IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
265            IGCM_debug_Verif_Exit
266        fi
267    else
268        value=DEFAULT
269    fi
270    IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
271
272
273    ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
274    LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
275    IGCM_debug_Print 3 "LMDZ_t_coupl "   ${LMDZ_t_coupl}
276    IGCM_comp_modifyDefFile nonblocker config.def t_coupl   ${LMDZ_t_coupl} 
277
278    ##-- Add special treatement for CARBON CYCLE
279    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
280        ATM_Carbon_Update
281    fi
282
283
284    ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
285    ##   COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
286    if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] &&  [ ${year} -ge 1979 ]) ; then
287        LMDZ_COSP_daily=.TRUE.
288    fi
289
290    ## Modifiy
291    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel}
292   
293    IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe}
294   
295    if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then
296        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2
297    else
298        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5
299    fi
300   
301    IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf}
302   
303    if [ X${OutLevel} = Xlow ] ; then
304        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5
305    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 5
306    elif [ X${OutLevel} = Xmedium ] ; then
307        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6
308    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 6
309    elif [ X${OutLevel} = Xhigh ] ; then
310        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7
311    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 7
312    fi
313       
314    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
315    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
316
317    IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn}
318
319    IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly}
320    IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily}
321    IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf}
322   
323    IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly}
324    IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily}
325    IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf}
326
327    # Activate the histstrataer output files only for configuration with interactive stratospheric aerosols
328    # done by setting the key word LMDZ_strataero=y in lmdz.card
329    if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
330        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE.
331    IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled .TRUE.
332    else
333        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .FALSE.
334    IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled .FALSE.
335    fi
336
337
338    ## run.def parameters
339
340
341    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
342    if [ ${CumulPeriod} -eq 1 ] ; then
343        IGCM_comp_modifyDefFile blocker run.def raz_date  1
344    else
345        IGCM_comp_modifyDefFile blocker run.def raz_date  0
346    fi
347
348    ##-- Calendar type for LMDZ and create_etat0_limit
349    case ${config_UserChoices_CalendarType} in
350        leap|gregorian)
351            IGCM_comp_modifyDefFile blocker run.def calend  gregorian ;;
352        noleap)
353            IGCM_comp_modifyDefFile blocker run.def calend  earth_365d ;;
354        360d)
355            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
356        *)
357            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
358    esac
359
360    IGCM_comp_modifyDefFile blocker run.def dayref    ${InitDay}
361    IGCM_comp_modifyDefFile blocker run.def nday      ${PeriodLengthInDays}
362
363    # Set anneeref different for gcm and ce0l
364    # Test if executable create_etat0_limit is present and lmdz.x is not present
365    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
366        # for case ce0l : always take current year
367        IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
368
369        # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
370        # In more recent versions of LMDZ, this will not be needed.
371        IGCM_comp_modifyDefFile force   run.def use_filtre_fft n
372    else
373        # for case gcm : take first year of simulation
374        IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
375    fi
376
377    ## Determine from the variable ListOfComponents in config.card coupling to external models
378    ## and set corresponding parameters in run.def
379    echo ListOfComponents now running : ${config_ListOfComponents[*]}
380
381    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
382        echo "Activate ORCHIDEE, set VEGET=y in run.def"
383        IGCM_comp_modifyDefFile blocker run.def VEGET y
384    else
385        echo "No ORCHIDEE, set VEGET=n in run.def"
386        IGCM_comp_modifyDefFile blocker run.def VEGET n
387    fi
388
389    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
390        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
391        IGCM_comp_modifyDefFile blocker run.def type_ocean couple
392    else
393        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
394        IGCM_comp_modifyDefFile nonblocker run.def type_ocean force
395    fi
396
397    if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
398    echo "Activate coupling to INCA, set type_trac=inca in run.def"
399    IGCM_comp_modifyDefFile blocker run.def type_trac inca
400    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
401    echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
402    IGCM_comp_modifyDefFile blocker run.def type_trac repr
403        IGCM_comp_modifyDefFile blocker run.def config_inca none
404    elif [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
405        echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coag in run.def"
406        IGCM_comp_modifyDefFile blocker run.def type_trac coag
407        IGCM_comp_modifyDefFile blocker run.def config_inca none
408    else
409    echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
410    IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
411        IGCM_comp_modifyDefFile blocker run.def config_inca none
412    fi
413
414    # run.def : Activate the call to phytrac
415    if [ ! X${lmdz_UserChoices_iflag_phytrac} = X ]; then
416        IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac ${lmdz_UserChoices_iflag_phytrac}
417    elif [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
418    IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac 1
419    else
420        IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac 0
421    fi 
422
423    # physiq.def : Activate the call to phytrac
424    if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then
425        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  ${lmdz_UserChoices_ok_bug_cv_trac}
426    else
427        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  n
428    fi 
429
430    # config.def : Activate direct radiative effect if ok_ade=y
431    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
432        IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
433    else
434        IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
435    fi 
436
437    # config.def : Activate indirect radiative effect if ok_aie=y
438    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
439        IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
440    else
441        IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
442    fi 
443
444    # config.def : Activate online aerosol coupled model if aerosol_couple=y
445    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
446        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
447    else
448        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
449    fi 
450
451    # config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y
452    if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then
453        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple}
454    else
455        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n
456    fi 
457
458    # config.def : Activate reading of ozone in climatology if read_climoz=2
459    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
460        IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
461    else
462        IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0     
463    fi 
464
465    # config.def : Choose aerosol use in radiative effect
466    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only
467    # =5 => dust only =6 => all aerosol   
468    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
469        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
470    else
471        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
472    fi 
473
474    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
475    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
476        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
477    else
478        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
479    fi 
480
481    # config.def : Activate COSP
482    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
483        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
484    else
485        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
486    fi 
487
488    # config.def : Modify parameter pmagic if it is set in lmdz.card
489    if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
490        IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
491    else
492        # Take default value set in config.def
493        IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
494    fi 
495
496    # config.def : Modify parameter ok_volcan if it is set in lmdz.card
497    if [ ! X${lmdz_UserChoices_ok_volcan} = X ]; then
498    IGCM_comp_modifyDefFile nonblocker config.def ok_volcan ${lmdz_UserChoices_ok_volcan}
499    else
500    # Take default value set in config.def
501    IGCM_comp_modifyDefFile nonblocker config.def ok_volcan DEFAULT
502    fi
503
504    # config.def : set ok_volcan to y if we are in the strataero config
505    if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
506    IGCM_comp_modifyDefFile nonblocker config.def ok_volcan y
507    else
508    IGCM_comp_modifyDefFile nonblocker config.def ok_volcan DEFAULT
509    fi
510
511    # Note: ok_volcan is a flag allowing a double-call with/without natural forcing (instead of with/without anthro forcing).
512
513    # physiq.def : Modify parameter tau_gl if it is set in lmdz.card
514    if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then
515        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl}
516    else
517        # Take default value set in physiq.def
518        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT
519    fi
520   
521
522    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
523    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
524        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
525    else
526        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
527    fi
528
529
530    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
531    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
532    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
533        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
534        IGCM_sys_Mv gcm.def.tmp gcm.def
535        echo
536        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
537        echo
538        cat gcm.def
539        ByPass_hgardfou_teta=n
540        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
541    fi
542
543    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
544    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
545    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
546        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
547        IGCM_sys_Mv gcm.def.tmp gcm.def
548        echo
549        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
550        echo
551        cat gcm.def
552        ByPass_hgardfou_mats=n
553        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
554    fi
555
556    # Add include of LMDZ context in iodef.xml
557    # In iodef.xml add on the next line after "COMPONENT CONTEXT"
558    echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
559    # Add inclusion of file context_input_lmdz.xml if this file exists
560    if [ -f context_input_lmdz.xml ] ; then
561        echo '<context id="LMDZ" src="./context_input_lmdz.xml"/>' >> add.tmp
562    fi
563    # Include xml files for output configuration if running with workflow CMIP6
564    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
565        echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
566        echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
567    fi
568    cp iodef.xml iodef.xml.tmp
569    sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
570    rm iodef.xml.tmp add.tmp
571
572    #Long Name as global attribute (if LongName is not empty)
573    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
574        listfile=$(ls file_def*lmdz.xml)
575        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
576        for file in ${listfile}
577        do
578            cp ${file} ${file}.tmp
579            sed -e "/<file id/r add.tmp" \
580                ${file}.tmp > ${file}
581            rm ${file}.tmp
582        done
583        rm add.tmp
584    fi
585
586    #Compression level (if CompressionLevel is not empty)
587    if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then
588    echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel}
589    listfile=$(ls file_def*lmdz.xml)
590    for file in ${listfile}
591    do
592        sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file}
593    done
594    fi
595
596           
597    IGCM_debug_PopStack "ATM_Update"
598}
599
600#-----------------------------------
601function ATM_Finalize
602{
603    IGCM_debug_PushStack "ATM_Finalize"
604
605    # Add special treatement for CARBON CYCLE
606    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
607        ATM_Carbon_Finalize
608    fi
609
610    echo FINALIZE ATM !
611
612    IGCM_debug_PopStack "ATM_Finalize"
613}
614
615
616
617function ATM_Carbon_Update
618{
619    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
620
621    IGCM_debug_PushStack "ATM_Carbon_Update"
622
623    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
624    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
625    typeset PathCO2log
626    typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
627   
628    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
629        ##--Initialization of fluxes to an undefined value at the first run
630        UndefinedValueCo2=-9999
631        InitPeriodCo2=0
632        InitDateBeginCo2=${UndefinedValueCo2}
633        InitYearCo2=$(( ${year} - 1 )) 
634        InitDateEndCo2=${InitYearCo2}1231
635        fCO2_ff=${UndefinedValueCo2} 
636        CO2SBG=${UndefinedValueCo2}
637        CO2LU=${UndefinedValueCo2}
638        CO2MBG=${UndefinedValueCo2}
639        CO2_ppm_prec=${UndefinedValueCo2}
640        # Get the initial value of atmosp. pco2
641        CO2_ppm=${lmdz_UserChoices_co2_init}
642       
643        IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
644        IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
645       
646        # Save CO2 values in ExeCpuLog variable contents 5 fields
647        echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
648            gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
649                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
650       
651        # Get the path where the log file co2.log is
652        PathCO2log=${SUBMIT_DIR} 
653        # Get Previous line in co2.log
654        PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
655       
656    else
657       
658        # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
659        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
660        #SubmitRestartPath=
661        if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
662            IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
663            PathCO2log=${config_ATM_SubmitRestartPath}
664            Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
665            PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
666           
667            IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
668            IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
669           
670            # Save Last Line of control in new co2.log file
671            InitPeriodCo2=0   
672            InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
673            InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
674            fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
675            CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
676            CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
677            CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
678            CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
679            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
680           
681            echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
682                gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
683                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
684        else
685           # Get restart line in co2.log
686            PathCO2log=${SUBMIT_DIR}
687            PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
688           # Get the value of atmosp. pco2 in co2.log
689            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
690        fi
691       
692    fi
693   
694    if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
695        # Modify co2_ppm in config.def only for historical run
696        # If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
697        IGCM_comp_modifyDefFile force config.def co2_ppm     ${CO2_ppm}
698    fi
699    IGCM_debug_PopStack "ATM_Carbon_Update"
700}
701
702
703function ATM_Carbon_Finalize
704{
705    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
706
707    IGCM_debug_PushStack "ATM_Carbon_Finalize"
708
709    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
710   
711        # Fossil fuel emission
712    if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
713            # For Control, no fossil fuel emission :
714        fCO2_ff=0
715        echo "Fossil Fuel for control run  :" ${fCO2_ff}
716    else
717            # For historical, get the fossile fuel file :
718        fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
719        echo "Fossil Fuel for historical run  :" ${fCO2_ff}
720    fi
721   
722        # Get the value of ocean carbon flux
723    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
724    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
725    echo "Ocean carbon flux  :" ${CO2MBG}
726   
727        # Get the value of land fluxes
728    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
729    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
730    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
731    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
732    echo "Land carbon flux (NEP)         :" ${CO2SRF}
733    echo "LU flux          (FLUC)        :" ${CO2LU}
734    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
735   
736        # Previous CO2
737    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
738    echo "Previous CO2  :" ${CO2_ppm_prec}
739   
740        # Formula
741    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
742    echo "New CO2  :" ${CO2_ppm}
743   
744        # Save CO2 values in ExeCpuLog variable contents 5 fields
745    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
746        gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
747                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
748   
749    IGCM_debug_PopStack "ATM_Carbon_Finalize"
750}
Note: See TracBrowser for help on using the repository browser.