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source: CONFIG/UNIFORM/v6/LMDZOR_v6/GENERAL/DRIVER/lmdz.driver @ 2500

Last change on this file since 2500 was 2500, checked in by sdipsl, 9 years ago
LMDZOR_v6 gets closer to LMDZ latest new physics. Turn on CWRR in orchidee (11 layers). By default won't run because of lacking physiq.def_L79_NPv5. Get in touch with LMDz team.
File size: 34.7 KB

Rev	Line
[396]	1	#!/bin/ksh
	2	#-----------------------------------------------------------------
	3	function ATM_Initialize
	4	{
	5	IGCM_debug_PushStack "ATM_Initialize"
	6
[671]	7	RESOL_ATM=$( echo $RESOL \| awk "-Fx" '{print $2}' \| awk "-F-" '{print $1}')
[396]	8
[2321]	9	[ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) \|\| RESOL_ATM_3D=96x95x39
[396]	10
[659]	11	RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $3}' )
[1802]	12	RESOL_ATM_X=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $1}' )
	13	RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $2}' )
	14	RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
[649]	15
[1923]	16	##-- Calendar type for LMDZ and create_etat0_limit
[697]	17	case ${config_UserChoices_CalendarType} in
	18	leap\|gregorian)
[1923]	19	CalendarTypeForLmdz=earth_366d
	20	CalendarTypeForCreate=gregorian;;
[697]	21	noleap)
[1923]	22	CalendarTypeForLmdz=earth_365d
	23	CalendarTypeForCreate=${CalendarTypeForLmdz};;
[697]	24	360d)
[1923]	25	CalendarTypeForLmdz=earth_360d
	26	CalendarTypeForCreate=${CalendarTypeForLmdz};;
[697]	27	*)
	28	CalendarTypeForLmdz=earth_360d
[1923]	29	CalendarTypeForCreate=${CalendarTypeForLmdz}
[697]	30	esac
	31
[1541]	32	##- LMDZ physics version
	33	## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
	34	if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
	35	LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
	36	else
	37	LMDZ_Physics=AP
	38	fi
	39	echo LMDZ physics version : ${LMDZ_Physics}
	40
[1643]	41	##- Create_etat0_limit version
[1782]	42	## Define variable CREATE only if it is set in lmdz.card section UserChoices.
	43	## This variable is only used in lmdz.card to choose input files.
	44	if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
	45	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
	46	CREATE=${lmdz_UserChoices_CREATE}
	47	echo create_etat0_limit version : ${CREATE}
	48	fi
[1643]	49
[1782]	50
[1550]	51	## - LMDZ choice of config.def file
	52	## ConfType must be set in lmdz.card
	53	ConfType=${lmdz_UserChoices_ConfType}
[1541]	54
[1550]	55	##- LMDZ output level, to be set in lmdz.card
	56	if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
	57	# OutLevel is not set. Take default value low.
	58	OutLevel=low
	59	else
	60	OutLevel=${lmdz_UserChoices_OutLevel}
	61	fi
	62
[1539]	63	##-- Output frequency purpose ....
[396]	64	##-- Initialisation ....
[1539]	65	ok_mensuel=n
	66	ok_journe=n
[396]	67	ok_hf=n
[1539]	68	ok_hf3h=n
	69	ok_hf3hm=n
	70	ok_stn=n
[396]	71
	72	case ${config_UserChoices_PeriodLength} in
[1539]	73	1Y\|1y\|1M\|1m) ok_mensuel=y ;;
	74	5D\|5d\|1D\|1d) ok_journe=y ;;
[396]	75	esac
	76
	77	for frequency in ${config_ATM_WriteFrequency} ; do
	78	case ${frequency} in
[1539]	79	1M\|1m) ok_mensuel=y ;;
[396]	80	esac
	81	case ${frequency} in
[1539]	82	5D\|5d\|1D\|1d) ok_journe=y ;;
	83	esac
	84	case ${frequency} in
[396]	85	HF\|hf) ok_hf=y ;;
	86	esac
[1539]	87	case ${frequency} in
	88	HF3h\|hf3h) ok_hf3h=y ;;
	89	esac
	90	case ${frequency} in
	91	HF3hm\|hf3hm) ok_hf3hm=y ;;
	92	esac
	93	case ${frequency} in
	94	STN\|stn) ok_stn=y ;;
	95	esac
[396]	96	done
	97
[902]	98	## Read LMDZ_NbPeriod_adjust option in lmdz.card
[1688]	99	if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then
	100	# The variable is not in lmdz.card, set default value
	101	LMDZ_NbPeriod_adjust=0
	102	else
	103	LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
	104	fi
[396]	105
[815]	106	if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
[1688]	107	LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
[815]	108	fi
	109
[912]	110
[1783]	111	## Read LMDZ_COSP_OK in lmdz.card
	112	if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then
	113	LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
	114	else
	115	LMDZ_COSP_OK=n
	116	fi
	117	## Read LMDZ_COSP_monthly in lmdz.card
	118	if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then
	119	LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
	120	else
	121	LMDZ_COSP_monthly=n
	122	fi
	123	## Read LMDZ_COSP_daily in lmdz.card
	124	if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then
	125	LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
	126	else
	127	LMDZ_COSP_daily=n
	128	fi
	129	## Read LMDZ_COSP_hf in lmdz.card
	130	if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then
	131	LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
	132	else
	133	LMDZ_COSP_hf=n
	134	fi
[1000]	135
[1783]	136	## Read LMDZ_NMC_monthly in lmdz.card
	137	if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then
	138	LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
	139	else
	140	LMDZ_NMC_monthly=n
	141	fi
[1000]	142
[1783]	143	## Read LMDZ_NMC_daily in lmdz.card
	144	if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then
	145	LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
	146	else
	147	LMDZ_NMC_daily=n
	148	fi
	149
	150	## Read LMDZ_NMC_hf in lmdz.card
	151	if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then
	152	LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
	153	else
	154	LMDZ_NMC_hf=n
	155	fi
	156
	157
[396]	158	IGCM_debug_PopStack "ATM_Initialize"
	159	}
	160
	161	#-----------------------------------------------------------------
	162	function ATM_Update
	163	{
	164	IGCM_debug_PushStack "ATM_Update"
	165
[1537]	166
[749]	167	case ${config_UserChoices_PeriodLength} in
	168	Y\|y)
	169	LMDZ_ecrit_ISCCP=30.
	170	LMDZ_periodav=30.
[755]	171	if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
[1649]	172	echo Do not consider following warning if your running create_etat0_limit :
[1650]	173	echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d
[1649]	174	fi
[749]	175	;;
	176	*)
	177	LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
	178	LMDZ_periodav=${PeriodLengthInDays}.
	179	;;
	180	esac
[1546]	181
[396]	182	##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
	183	if [ ${CumulPeriod} -eq 1 ] ; then
	184	RAZ_DATE=1
	185	else
	186	RAZ_DATE=0
	187	fi
	188
[1892]	189	## Algorithme for special treatment for Bands_xxx file
	190	## For CumulPeriod=1 ;
	191	## IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n
	192	## IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix.
	193	## IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix.
	194	## ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ;
	195	##
	196	## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ;
	197	## Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ;
	198	##
	199	## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ;
[815]	200
	201	if [ ${CumulPeriod} -eq 1 ] ; then
	202	if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
[1778]	203	if [ ! X${LMDZ_Bands_file_name} = X ] ; then
[1688]	204	IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
	205	IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
	206	IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
	207	fi
[815]	208	fi
	209	fi
	210
[743]	211	LMDZ_adjust=n
	212	[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
	213
[815]	214	RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
	215	[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 ))
[743]	216
[1897]	217	# Get Bands file from PARAM directory if file exist
[1998]	218	if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then
[1894]	219	IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
[1892]	220	IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
	221	fi
[743]	222
[1535]	223	##-- GHG forcing :
[2321]	224	## If forcing file exist in run directory, read values for the current year
	225	## and set in config.def. If not use the default value set in config.def
[2333]	226
	227	# Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
[1535]	228	if [ -f SOLARANDVOLCANOES.txt ] ; then
[2333]	229	value=`grep Annee_${year} SOLARANDVOLCANOES.txt \| awk -F= '{print $2}'`
	230	if [ X"${value}" = X ] ; then
[2321]	231	# The grep returned empty variable, stop execution
	232	IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
	233	IGCM_debug_Verif_Exit
	234	fi
[1690]	235	else
[2333]	236	value=DEFAULT
[1535]	237	fi
[2333]	238	IGCM_comp_modifyDefFile nonblocker config.def solaire $value
[2321]	239
[2333]	240
	241	# Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
[1535]	242	if [ -f CO2.txt ] ; then
[2333]	243	value=`grep Annee_${year} CO2.txt \| awk -F= '{print $2}'`
	244	if [ X"${value}" = X ] ; then
[2321]	245	# The grep returned empty variable, stop execution
	246	IGCM_debug_Exit "The file CO2.txt do not contain the current year."
	247	IGCM_debug_Verif_Exit
	248	fi
[1690]	249	else
[2333]	250	value=DEFAULT
[1535]	251	fi
[2333]	252	IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
[1690]	253
[2333]	254
	255	# Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
[1535]	256	if [ -f CH4.txt ] ; then
[2333]	257	value=`grep Annee_${year} CH4.txt \| awk -F= '{print $2}'`
	258	if [ X"${value}" = X ] ; then
[2321]	259	# The grep returned empty variable, stop execution
	260	IGCM_debug_Exit "The file CH4.txt do not contain the current year."
	261	IGCM_debug_Verif_Exit
	262	fi
[2333]	263	else
	264	value=DEFAULT
[1535]	265	fi
[2333]	266	IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
[2321]	267
[2333]	268
	269	# Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
[1535]	270	if [ -f N2O.txt ] ; then
[2333]	271	value=`grep Annee_${year} N2O.txt \| awk -F= '{print $2}'`
	272	if [ X"${value}" = X ] ; then
[2321]	273	# The grep returned empty variable, stop execution
	274	IGCM_debug_Exit "The file N2O.txt do not contain the current year."
	275	IGCM_debug_Verif_Exit
	276	fi
[1690]	277	else
[2333]	278	value=DEFAULT
[1535]	279	fi
[2333]	280	IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
[2321]	281
[2333]	282	# Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
[1535]	283	if [ -f CFC11.txt ] ; then
[2333]	284	value=`grep Annee_${year} CFC11.txt \| awk -F= '{print $2}'`
	285	if [ X"${value}" = X ] ; then
[2321]	286	# The grep returned empty variable, stop execution
	287	IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
	288	IGCM_debug_Verif_Exit
	289	fi
[1690]	290	else
[2333]	291	value=DEFAULT
[1535]	292	fi
[2333]	293	IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
[2321]	294
[2333]	295
	296	# Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
[1535]	297	if [ -f CFC12.txt ] ; then
[2333]	298	value=`grep Annee_${year} CFC12.txt \| awk -F= '{print $2}'`
	299	if [ X"${value}" = X ] ; then
[2321]	300	# The grep returned empty variable, stop execution
	301	IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
	302	IGCM_debug_Verif_Exit
	303	fi
[1690]	304	else
[2333]	305	value=DEFAULT
[1535]	306	fi
[2333]	307	IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
[1535]	308
[1780]	309
[2336]	310	## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
	311	LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
[2332]	312	IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl}
[2333]	313	IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl}
[2332]	314
[1780]	315	##-- Add special treatement for CARBON CYCLE
[1546]	316	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
[1780]	317	ATM_Carbon_Update
	318	fi
[1537]	319
	320
[1538]	321	##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
	322	## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
	323	if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then
	324	LMDZ_COSP_daily=y
	325	fi
[1537]	326
[1538]	327
[1540]	328	## output.def parameters
[1546]	329	# columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def :
[2342]	330	# histmth histday histhf histhf3h histhf3hm histstn
[2333]	331	IGCM_comp_modifyDefFile nonblocker output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}"
	332	IGCM_comp_modifyDefFile nonblocker output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP}
	333	IGCM_comp_modifyDefFile nonblocker output.def ok_cosp ${LMDZ_COSP_OK}
	334	IGCM_comp_modifyDefFile nonblocker output.def ok_mensuelCOSP ${LMDZ_COSP_monthly}
	335	IGCM_comp_modifyDefFile nonblocker output.def ok_journeCOSP ${LMDZ_COSP_daily}
	336	IGCM_comp_modifyDefFile nonblocker output.def ok_hfCOSP ${LMDZ_COSP_hf}
	337	IGCM_comp_modifyDefFile nonblocker output.def ok_histNMC "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}"
[396]	338
[2332]	339	# XIOS XML definition
[2480]	340	if [ X${lmdz_UserChoices_XIOS} = Xy ] ; then
[2332]	341	# Default init : files are desactivated
[2341]	342	IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth enabled .FALSE.
	343	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday enabled .FALSE.
	344	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf enabled .FALSE.
[2342]	345	# IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h enabled .FALSE.
	346	# IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm enabled .FALSE.
[2341]	347	IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn enabled .FALSE.
	348	IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC enabled .FALSE.
	349	IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC enabled .FALSE.
	350	IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC enabled .FALSE.
[2500]	351	IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP enabled .FALSE.
	352	IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP enabled .FALSE.
	353	IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP enabled .FALSE.
[2480]	354
[2332]	355	# Default output level : 5
[2480]	356	IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth output_level 5
	357	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_level 5
	358	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 5
	359	# IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h output_level 5
	360	# IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm output_level 5
	361	IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn output_level 5
	362	IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC output_level 5
	363	IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC output_level 5
	364	IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC output_level 5
[2500]	365	IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP output_level 5
	366	IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP output_level 5
	367	IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP output_level 5
[2332]	368	# Filling of XML files
	369	if [ X${ok_mensuel} = Xy ] ; then
[2341]	370	IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth enabled .TRUE.
	371	IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth output_freq 1mo
	372	IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth name histmth
[2332]	373	fi
	374	if [ X${ok_journe} = Xy ] ; then
[2341]	375	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday enabled .TRUE.
	376	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_freq 1d
	377	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday name histday
[2332]	378	if [ X${OutLevel} = Xlow ] \|\| [ X${OutLevel} = Xmedium ] ; then
[2341]	379	IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_level 2
[2332]	380	fi
	381	fi
	382	if [ X${ok_hf} = Xy ] ; then
[2341]	383	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf enabled .TRUE.
	384	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_freq 6h
	385	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf name histhf
[2332]	386	if [ X${OutLevel} = Xlow ] ; then
[2341]	387	IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 2
[2332]	388	fi
	389	fi
[2342]	390	# if [ X${ok_hf3h} = Xy ] ; then
	391	# IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h enabled .TRUE.
	392	# IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h output_freq 3h
	393	# IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h name histhf3h
	394	# fi
	395	# if [ X${ok_hf3hm} = Xy ] ; then
	396	# IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm enabled .TRUE.
	397	# IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm output_freq 3h
	398	# IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm name histhf3hm
	399	# fi
[2332]	400	if [ X${ok_stn} = Xy ] ; then
[2341]	401	IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn enabled .TRUE.
	402	IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn output_freq 1800s
	403	IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn name histstn
[2332]	404	fi
	405	if [ X${LMDZ_NMC_monthly} = Xy ] ; then
[2341]	406	IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC enabled .TRUE.
	407	IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC output_freq 1mo
	408	IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC name histmthNMC
[2332]	409	fi
	410	if [ X${LMDZ_NMC_daily} = Xy ] ; then
[2341]	411	IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC enabled .TRUE.
	412	IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC output_freq 1d
	413	IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC name histdayNMC
[2332]	414	fi
	415	if [ X${LMDZ_NMC_hf} = Xy ] ; then
[2341]	416	IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC enabled .TRUE.
	417	IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC output_freq 6h
	418	IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC name histhfNMC
[2332]	419	fi
[2500]	420	if [ X${LMDZ_COSP_monthly} = Xy ] ; then
	421	IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP enabled .TRUE.
	422	IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP output_freq 1mo
	423	IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP name histmthCOSP
	424	fi
	425	if [ X${LMDZ_COSP_daily} = Xy ] ; then
	426	IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP enabled .TRUE.
	427	IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP output_freq 1d
	428	IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP name histdayCOSP
	429	fi
	430	if [ X${LMDZ_COSP_hf} = Xy ] ; then
	431	IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP enabled .TRUE.
	432	IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP output_freq 6h
	433	IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP name histhfCOSP
	434	fi
	435
[2332]	436	fi
	437
[1544]	438	## gcm.def parameters :
[2333]	439	# Modification of variable iphysiq depending on the physics
[2332]	440	if [ X${LMDZ_Physics} = X"AP" ] ; then
[2470]	441	if [ ${RESOL_ATM_3D} = 96x95x39 ]; then
	442	value=10
	443	elif [ ${RESOL_ATM_3D} = 144x142x39 ]; then
	444	value=15
	445	else
	446	IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
	447	IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
	448	IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
	449	fi
	450	elif [ X${LMDZ_Physics} = X"NPv3.1" ] ; then
	451	if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then
	452	value=5
	453	elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then
	454	value=5
	455	else
	456	IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
	457	IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
	458	IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
	459	fi
	460	elif [ X${LMDZ_Physics} = X"NPv3.2" ] ; then
	461	if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then
	462	value=5
	463	elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then
	464	value=5
	465	elif [ ${RESOL_ATM_3D} = 128x118x39 ] ; then
	466	value=15
	467	else
	468	IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
	469	IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
	470	IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
	471	fi
[2500]	472	elif [ X${LMDZ_Physics} = X"NPv5" ] ; then
	473	if [ ${RESOL_ATM_3D} = 144x142x79 ] ; then
	474	value=5
	475	fi
[1690]	476	else
[2470]	477	# Take default value set in gcm.def
[2333]	478	value=DEFAULT
[1544]	479	fi
[2333]	480	IGCM_comp_modifyDefFile nonblocker gcm.def iphysiq $value
[2470]	481
[396]	482
[911]	483	## run.def parameters
[2333]	484	IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay}
	485	IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays}
	486	IGCM_comp_modifyDefFile blocker run.def raz_date ${RAZ_DATE}
	487	IGCM_comp_modifyDefFile blocker run.def periodav ${LMDZ_periodav}
	488	IGCM_comp_modifyDefFile nonblocker run.def adjust ${LMDZ_adjust}
[396]	489
[1804]	490	# Set anneeref different for gcm and ce0l
[1923]	491	# Variable calend is different for a run with create_etat0_limit and the gcm
[1804]	492	# Test if executable create_etat0_limit is present and lmdz.x is not present
	493	if [ -f create_etat0_limit* ] \|\| [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
	494	# for case ce0l : always take current year
[2333]	495	IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
	496	IGCM_comp_modifyDefFile blocker run.def calend ${CalendarTypeForCreate}
[2480]	497
	498	# Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
	499	# In more recent versions of LMDZ, this will not be needed.
	500	IGCM_comp_modifyDefFile force run.def use_filtre_fft n
[1804]	501	else
	502	# for case gcm : take first year of simulation
[2333]	503	IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
	504	IGCM_comp_modifyDefFile blocker run.def calend ${CalendarTypeForLmdz}
[1804]	505	fi
[1643]	506
[1804]	507	# Activate creation of file grilles_gcm.nc only at first period
	508	if [ ${CumulPeriod} -eq 1 ] ; then
[2333]	509	IGCM_comp_modifyDefFile nonblocker run.def grilles_gcm_netcdf y
[1804]	510	else
[2333]	511	IGCM_comp_modifyDefFile nonblocker run.def grilles_gcm_netcdf n
[1804]	512	fi
	513
[1650]	514	## Determine from the variable ListOfComponents in config.card coupling to external models
	515	## and set corresponding parameters in run.def
	516	echo ListOfComponents now running : ${config_ListOfComponents[*]}
	517
	518	if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
	519	echo "Activate ORCHIDEE, set VEGET=y in run.def"
[2333]	520	IGCM_comp_modifyDefFile blocker run.def VEGET y
[1650]	521	else
	522	echo "No ORCHIDEE, set VEGET=n in run.def"
[2333]	523	IGCM_comp_modifyDefFile blocker run.def VEGET n
[1650]	524	fi
	525
	526	if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
	527	echo "Activate coupling to ocean, set type_ocean=couple in run.def"
[2333]	528	IGCM_comp_modifyDefFile blocker run.def type_ocean couple
[1650]	529	else
	530	echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
[2333]	531	IGCM_comp_modifyDefFile blocker run.def type_ocean force
[1650]	532	fi
	533
	534	if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
	535	echo "Activate coupling to INCA, set type_trac=inca in run.def"
[2333]	536	IGCM_comp_modifyDefFile blocker run.def type_trac inca
[1650]	537	elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
	538	echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
[2333]	539	IGCM_comp_modifyDefFile blocker run.def type_trac repr
	540	IGCM_comp_modifyDefFile blocker run.def config_inca none
[1650]	541	else
	542	echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
[2333]	543	IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
	544	IGCM_comp_modifyDefFile blocker run.def config_inca none
[1650]	545	fi
	546
	547
[2015]	548	# config.def : Activate direct radiative effect if ok_ade=y
	549	if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
[2333]	550	IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
[2015]	551	else
[2333]	552	IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
[2015]	553	fi
	554
	555	# config.def : Activate indirect radiative effect if ok_aie=y
	556	if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
[2333]	557	IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
[2015]	558	else
[2333]	559	IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
[2015]	560	fi
[1816]	561
[2015]	562	# config.def : Activate online aerosol coupled model if aerosol_couple=y
	563	if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
[2333]	564	IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
[1686]	565	else
[2333]	566	IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
[2015]	567	fi
[1686]	568
[2015]	569	# config.def : Activate reading of ozone in climatology if read_climoz=2
	570	if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
[2333]	571	IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
[2015]	572	else
[2333]	573	IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0
[2015]	574	fi
	575
	576	# config.def : Choose aerosol use in radiative effect
	577	# type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only
	578	# =5 => dust only =6 => all aerosol
	579	if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
[2333]	580	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
[2015]	581	else
[2333]	582	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
[2015]	583	fi
	584
	585	# config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
	586	if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
[2333]	587	IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
[2015]	588	else
[2333]	589	IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
[2015]	590	fi
	591
[1690]	592	# guide.def : Activate nudging if ok_guide=y set in lmdz.card
[1643]	593	if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
[2333]	594	IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide}
[1690]	595	else
[2333]	596	IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
[1643]	597	fi
	598
[902]	599	## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
[1172]	600	ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
[1688]	601	if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
[396]	602	awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
	603	IGCM_sys_Mv gcm.def.tmp gcm.def
	604	echo
	605	IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
	606	echo
	607	cat gcm.def
	608	ByPass_hgardfou_teta=n
[902]	609	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
[396]	610	fi
	611
[902]	612	## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
[1172]	613	ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
[1688]	614	if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
[396]	615	sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
	616	IGCM_sys_Mv gcm.def.tmp gcm.def
	617	echo
	618	IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
	619	echo
	620	cat gcm.def
	621	ByPass_hgardfou_mats=n
[902]	622	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
[396]	623	fi
	624
[2332]	625	if [ X${lmdz_UserChoices_XIOS} = Xy ] ; then
[2238]	626	# Add include of LMDZ context in iodef.xml
	627	# In iodef.xml add on next line after "COMPONENT CONTEXT"
	628	# <context id="LMDZ" src="./context_lmdz.xml"/>
[2332]	629	echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
	630	cp iodef.xml iodef.xml.tmp
	631	sed -e "/COMPONENT CONTEXT/r add.tmp" \
	632	iodef.xml.tmp > iodef.xml
	633	rm iodef.xml.tmp add.tmp
[2476]	634
	635	# Set ok_all_xml=y in run.def
	636	IGCM_comp_modifyDefFile nonblocker run.def ok_all_xml y
	637	else
	638	# Deactivate ok_all_xml in run.def
	639	IGCM_comp_modifyDefFile nonblocker run.def ok_all_xml n
[2332]	640	fi
	641
[396]	642	IGCM_debug_PopStack "ATM_Update"
	643	}
	644
	645	#-----------------------------------
	646	function ATM_Finalize
	647	{
	648	IGCM_debug_PushStack "ATM_Finalize"
	649
[1897]	650	# If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation.
[1892]	651	# Copy also the same file into ATM/Restart at ARCHIVE directory for backup.
[1897]	652	if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then
	653	if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then
	654	IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
	655	IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
	656	elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
	657	# Special case : first period and no adjust => Save bands file with suffix _0
	658	IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
	659	IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
	660	fi
[1892]	661	fi
[396]	662
[1537]	663	# Add special treatement for CARBON CYCLE
[1546]	664	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
[1780]	665	ATM_Carbon_Finalize
	666	fi
[1537]	667
[1780]	668	echo FINALIZE ATM !
[1537]	669
[1780]	670	IGCM_debug_PopStack "ATM_Finalize"
	671	}
[1537]	672
	673
	674
[1780]	675	function ATM_Carbon_Update
	676	{
	677	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
[1537]	678
[1780]	679	IGCM_debug_PushStack "ATM_Carbon_Update"
	680
	681	typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
	682	typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
	683	typeset PathCO2log
	684	typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
	685
	686	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
	687	##--Initialization of fluxes to an undefined value at the first run
	688	UndefinedValueCo2=-9999
	689	InitPeriodCo2=0
	690	InitDateBeginCo2=${UndefinedValueCo2}
	691	InitYearCo2=$(( ${year} - 1 ))
	692	InitDateEndCo2=${InitYearCo2}1231
	693	fCO2_ff=${UndefinedValueCo2}
	694	CO2SBG=${UndefinedValueCo2}
	695	CO2LU=${UndefinedValueCo2}
	696	CO2MBG=${UndefinedValueCo2}
	697	CO2_ppm_prec=${UndefinedValueCo2}
	698	# Get the initial value of atmosp. pco2
	699	CO2_ppm=${lmdz_UserChoices_co2_init}
	700
	701	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
	702	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
	703
[1537]	704	# Save CO2 values in ExeCpuLog variable contents 5 fields
[1780]	705	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
[1537]	706	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
[1780]	707	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	708
	709	# Get the path where the log file co2.log is
	710	PathCO2log=${SUBMIT_DIR}
	711	# Get Previous line in co2.log
	712	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
	713
	714	else
	715
	716	# NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
	717	# !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
	718	#SubmitRestartPath=
	719	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
	720	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
	721	PathCO2log=${config_ATM_SubmitRestartPath}
	722	Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
	723	PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
	724
	725	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
	726	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
	727
	728	# Save Last Line of control in new co2.log file
	729	InitPeriodCo2=0
	730	InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $2}' )
	731	InitDateEndCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $3}' )
	732	fCO2_ff=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $6}' )
	733	CO2SBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $8}' )
	734	CO2LU=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $9}' )
	735	CO2MBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $7}' )
	736	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $5}' )
	737	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	738
	739	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
	740	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
	741	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	742	else
	743	# Get restart line in co2.log
	744	PathCO2log=${SUBMIT_DIR}
	745	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
	746	# Get the value of atmosp. pco2 in co2.log
	747	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	748	fi
	749
[1537]	750	fi
[1780]	751
	752	if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
	753	# Modify co2_ppm in config.def only for historical run
[2333]	754	# If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
	755	IGCM_comp_modifyDefFile nonblocker config.def co2_ppm ${CO2_ppm}
[1780]	756	fi
	757	IGCM_debug_PopStack "ATM_Carbon_Update"
	758	}
[1537]	759
[396]	760
[1780]	761	function ATM_Carbon_Finalize
	762	{
	763	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
	764
	765	IGCM_debug_PushStack "ATM_Carbon_Finalize"
	766
	767	typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
	768
	769	# Fossil fuel emission
	770	if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
	771	# For Control, no fossil fuel emission :
	772	fCO2_ff=0
	773	echo "Fossil Fuel for control run :" ${fCO2_ff}
	774	else
	775	# For historical, get the fossile fuel file :
	776	fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
	777	echo "Fossil Fuel for historical run :" ${fCO2_ff}
	778	fi
	779
	780	# Get the value of ocean carbon flux
	781	CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
	782	CO2MBG=$( echo ${CO2MBG} \| sed -e "s/ *//" )
	783	echo "Ocean carbon flux :" ${CO2MBG}
	784
	785	# Get the value of land fluxes
	786	set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
	787	CO2SRF=$( echo ${CO2SBG_3V[0]} \| sed -e "s/ *//" )
	788	CO2LU=$( echo ${CO2SBG_3V[1]} \| sed -e "s/ *//" )
	789	CO2SBG=$( echo ${CO2SBG_3V[2]} \| sed -e "s/ *//" )
	790	echo "Land carbon flux (NEP) :" ${CO2SRF}
	791	echo "LU flux (FLUC) :" ${CO2LU}
	792	echo "Total Land carbon flux (NBP) :" ${CO2SBG}
	793
	794	# Previous CO2
	795	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	796	echo "Previous CO2 :" ${CO2_ppm_prec}
	797
	798	# Formula
	799	CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" \| bc -l )
	800	echo "New CO2 :" ${CO2_ppm}
	801
	802	# Save CO2 values in ExeCpuLog variable contents 5 fields
	803	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
	804	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
	805	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	806
	807	IGCM_debug_PopStack "ATM_Carbon_Finalize"
[396]	808	}

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