#!/bin/ksh
#-----------------------------------------------------------------
function ATM_Initialize
{
IGCM_debug_PushStack "ATM_Initialize"
RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
[ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
##-- Calendar type for LMDZ and create_etat0_limit
case ${config_UserChoices_CalendarType} in
leap|gregorian)
CalendarTypeForLmdz=gregorian
CalendarTypeForCreate=gregorian;;
noleap)
CalendarTypeForLmdz=earth_365d
CalendarTypeForCreate=${CalendarTypeForLmdz};;
360d)
CalendarTypeForLmdz=earth_360d
CalendarTypeForCreate=${CalendarTypeForLmdz};;
*)
CalendarTypeForLmdz=earth_360d
CalendarTypeForCreate=${CalendarTypeForLmdz}
esac
##- LMDZ physics version
## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
else
LMDZ_Physics=AP
fi
echo LMDZ physics version : ${LMDZ_Physics}
##- Create_etat0_limit version
## Define variable CREATE only if it is set in lmdz.card section UserChoices.
## This variable is only used in lmdz.card to choose input files.
if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
CREATE=${lmdz_UserChoices_CREATE}
echo create_etat0_limit version : ${CREATE}
fi
## - LMDZ choice of config.def file
## ConfType must be set in lmdz.card
ConfType=${lmdz_UserChoices_ConfType}
##- LMDZ output level, to be set in lmdz.card
if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
# OutLevel is not set. Take default value low.
OutLevel=low
else
OutLevel=${lmdz_UserChoices_OutLevel}
fi
##-- Output frequency purpose ....
##-- Initialisation ....
ok_mensuel=n
ok_journe=n
ok_hf=n
ok_hf3h=n
ok_hf3hm=n
ok_stn=n
case ${config_UserChoices_PeriodLength} in
1Y|1y|1M|1m) ok_mensuel=y ;;
5D|5d|1D|1d) ok_journe=y ;;
esac
for frequency in ${config_ATM_WriteFrequency} ; do
case ${frequency} in
1M|1m) ok_mensuel=y ;;
esac
case ${frequency} in
5D|5d|1D|1d) ok_journe=y ;;
esac
case ${frequency} in
HF|hf) ok_hf=y ;;
esac
case ${frequency} in
HF3h|hf3h) ok_hf3h=y ;;
esac
case ${frequency} in
HF3hm|hf3hm) ok_hf3hm=y ;;
esac
case ${frequency} in
STN|stn) ok_stn=y ;;
esac
done
## Read LMDZ_NbPeriod_adjust option in lmdz.card
if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then
# The variable is not in lmdz.card, set default value
LMDZ_NbPeriod_adjust=0
else
LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
fi
if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
fi
## Read LMDZ_COSP_OK in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then
LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
else
LMDZ_COSP_OK=n
fi
## Read LMDZ_COSP_monthly in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then
LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
else
LMDZ_COSP_monthly=n
fi
## Read LMDZ_COSP_daily in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then
LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
else
LMDZ_COSP_daily=n
fi
## Read LMDZ_COSP_hf in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then
LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
else
LMDZ_COSP_hf=n
fi
## Read LMDZ_NMC_monthly in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then
LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
else
LMDZ_NMC_monthly=n
fi
## Read LMDZ_NMC_daily in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then
LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
else
LMDZ_NMC_daily=n
fi
## Read LMDZ_NMC_hf in lmdz.card
if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then
LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
else
LMDZ_NMC_hf=n
fi
IGCM_debug_PopStack "ATM_Initialize"
}
#-----------------------------------------------------------------
function ATM_Update
{
IGCM_debug_PushStack "ATM_Update"
case ${config_UserChoices_PeriodLength} in
*Y|*y)
LMDZ_ecrit_ISCCP=30.
LMDZ_periodav=30.
if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
echo Do not consider following warning if your running create_etat0_limit :
echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d
fi
;;
*)
LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
LMDZ_periodav=${PeriodLengthInDays}.
;;
esac
##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
if [ ${CumulPeriod} -eq 1 ] ; then
RAZ_DATE=1
else
RAZ_DATE=0
fi
## Algorithme for special treatment for Bands_xxx file
## For CumulPeriod=1 ;
## IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n
## IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix.
## IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix.
## ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ;
##
## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ;
## Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ;
##
## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ;
if [ ${CumulPeriod} -eq 1 ] ; then
if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
if [ ! X${LMDZ_Bands_file_name} = X ] ; then
IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
fi
fi
fi
LMDZ_adjust=n
[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 ))
# Get Bands file from PARAM directory if file exist
if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then
IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
fi
##-- GHG forcing :
## If forcing file exist in run directory, read values for the current year
## and set in config.def. If not use the default value set in config.def
# Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
if [ -f SOLARANDVOLCANOES.txt ] ; then
value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def solaire $value
# Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
if [ -f CO2.txt ] ; then
value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CO2.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
# Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
if [ -f CH4.txt ] ; then
value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CH4.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
# Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
if [ -f N2O.txt ] ; then
value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file N2O.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
# Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
if [ -f CFC11.txt ] ; then
value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
# Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
if [ -f CFC12.txt ] ; then
value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl}
IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl}
##-- Add special treatement for CARBON CYCLE
if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
ATM_Carbon_Update
fi
##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then
LMDZ_COSP_daily=y
fi
# Default init : files are desactivated
IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf enabled .FALSE.
#IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h enabled .FALSE.
#IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP enabled .FALSE.
IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP enabled .FALSE.
# Default output level : 5
IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth output_level 5
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_level 5
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 5
#IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h output_level 5
#IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm output_level 5
IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn output_level 5
IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC output_level 5
IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC output_level 5
IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC output_level 5
IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP output_level 5
IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP output_level 5
IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP output_level 5
# FILLING XIOS XMLs
if [ X${ok_mensuel} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth output_freq 1mo
IGCM_comp_modifyXmlFile force file_def_histmth_lmdz.xml histmth name histmth
fi
if [ X${ok_journe} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_freq 1d
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday name histday
if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then
IGCM_comp_modifyXmlFile force file_def_histday_lmdz.xml histday output_level 2
fi
fi
if [ X${ok_hf} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_freq 6h
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf name histhf
if [ X${OutLevel} = Xlow ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 5
elif [ X${OutLevel} = Xmedium ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 6
elif [ X${OutLevel} = Xhigh ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf_lmdz.xml histhf output_level 7
fi
fi
if [ X${ok_hf3h} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h output_freq 3h
IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h name histhf3h
fi
if [ X${ok_hf3hm} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm output_freq 3h
IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm name histhf3hm
fi
if [ X${ok_stn} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn output_freq 1800s
IGCM_comp_modifyXmlFile force file_def_histstn_lmdz.xml histstn name histstn
fi
if [ X${LMDZ_NMC_monthly} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC output_freq 1mo
IGCM_comp_modifyXmlFile force file_def_histmthNMC_lmdz.xml histmthNMC name histmthNMC
fi
if [ X${LMDZ_NMC_daily} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC output_freq 1d
IGCM_comp_modifyXmlFile force file_def_histdayNMC_lmdz.xml histdayNMC name histdayNMC
fi
if [ X${LMDZ_NMC_hf} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC output_freq 6h
IGCM_comp_modifyXmlFile force file_def_histhfNMC_lmdz.xml histhfNMC name histhfNMC
fi
if [ X${LMDZ_COSP_OK} = Xy ] ; then
if [ X${LMDZ_COSP_monthly} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP output_freq 1mo
IGCM_comp_modifyXmlFile force file_def_histmthCOSP_lmdz.xml histmthCOSP name histmthCOSP
fi
if [ X${LMDZ_COSP_daily} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP output_freq 1d
IGCM_comp_modifyXmlFile force file_def_histdayCOSP_lmdz.xml histdayCOSP name histdayCOSP
fi
if [ X${LMDZ_COSP_hf} = Xy ] ; then
IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP enabled .TRUE.
IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP output_freq 6h
IGCM_comp_modifyXmlFile force file_def_histhfCOSP_lmdz.xml histhfCOSP name histhfCOSP
fi
fi
## gcm.def parameters :
# Modification of variable iphysiq depending on the physics
if [ X${LMDZ_Physics} = X"AP" ] ; then
if [ ${RESOL_ATM_3D} = 96x95x39 ]; then
value=10
elif [ ${RESOL_ATM_3D} = 144x142x39 ]; then
value=15
else
IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
fi
elif [ X${LMDZ_Physics} = X"NPv3.1" ] ; then
if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then
value=5
elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then
value=5
else
IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
fi
elif [ X${LMDZ_Physics} = X"NPv3.2" ] ; then
if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then
value=5
elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then
value=5
elif [ ${RESOL_ATM_3D} = 128x118x39 ] ; then
value=15
else
IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. "
IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package"
IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination."
fi
else
# Take default value set in gcm.def
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker gcm.def iphysiq $value
## run.def parameters
IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay}
IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays}
IGCM_comp_modifyDefFile blocker run.def raz_date ${RAZ_DATE}
IGCM_comp_modifyDefFile blocker run.def periodav ${LMDZ_periodav}
IGCM_comp_modifyDefFile nonblocker run.def adjust ${LMDZ_adjust}
# Set anneeref different for gcm and ce0l
# Variable calend is different for a run with create_etat0_limit and the gcm
# Test if executable create_etat0_limit is present and lmdz.x is not present
if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
# for case ce0l : always take current year
IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
IGCM_comp_modifyDefFile blocker run.def calend ${CalendarTypeForCreate}
# Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
# In more recent versions of LMDZ, this will not be needed.
IGCM_comp_modifyDefFile force run.def use_filtre_fft n
else
# for case gcm : take first year of simulation
IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
IGCM_comp_modifyDefFile blocker run.def calend ${CalendarTypeForLmdz}
fi
# Activate creation of file grilles_gcm.nc only at first period
if [ ${CumulPeriod} -eq 1 ] ; then
IGCM_comp_modifyDefFile nonblocker run.def grilles_gcm_netcdf y
else
IGCM_comp_modifyDefFile nonblocker run.def grilles_gcm_netcdf n
fi
## Determine from the variable ListOfComponents in config.card coupling to external models
## and set corresponding parameters in run.def
echo ListOfComponents now running : ${config_ListOfComponents[*]}
if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
echo "Activate ORCHIDEE, set VEGET=y in run.def"
IGCM_comp_modifyDefFile blocker run.def VEGET y
else
echo "No ORCHIDEE, set VEGET=n in run.def"
IGCM_comp_modifyDefFile blocker run.def VEGET n
fi
if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
echo "Activate coupling to ocean, set type_ocean=couple in run.def"
IGCM_comp_modifyDefFile blocker run.def type_ocean couple
else
echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
IGCM_comp_modifyDefFile blocker run.def type_ocean force
fi
if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
echo "Activate coupling to INCA, set type_trac=inca in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac inca
elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac repr
IGCM_comp_modifyDefFile blocker run.def config_inca none
else
echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
IGCM_comp_modifyDefFile blocker run.def config_inca none
fi
# config.def : Activate direct radiative effect if ok_ade=y
if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
fi
# config.def : Activate indirect radiative effect if ok_aie=y
if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
fi
# config.def : Activate online aerosol coupled model if aerosol_couple=y
if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
else
IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
fi
# config.def : Activate reading of ozone in climatology if read_climoz=2
if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
else
IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0
fi
# config.def : Choose aerosol use in radiative effect
# type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only
# =5 => dust only =6 => all aerosol
if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
else
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
fi
# config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
fi
# guide.def : Activate nudging if ok_guide=y set in lmdz.card
if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide}
else
IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
fi
## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
IGCM_sys_Mv gcm.def.tmp gcm.def
echo
IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
echo
cat gcm.def
ByPass_hgardfou_teta=n
IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
fi
## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
IGCM_sys_Mv gcm.def.tmp gcm.def
echo
IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
echo
cat gcm.def
ByPass_hgardfou_mats=n
IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
fi
if [ X${lmdz_UserChoices_XIOS} = Xy ] ; then
# Add include of LMDZ context in iodef.xml
# In iodef.xml add on next line after "COMPONENT CONTEXT"
#
echo '' > add.tmp
cp iodef.xml iodef.xml.tmp
sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
rm iodef.xml.tmp add.tmp
# Set ok_all_xml=y in run.def
IGCM_comp_modifyDefFile nonblocker run.def ok_all_xml y
else
# Deactivate ok_all_xml in run.def
IGCM_comp_modifyDefFile nonblocker run.def ok_all_xml n
fi
IGCM_debug_PopStack "ATM_Update"
}
#-----------------------------------
function ATM_Finalize
{
IGCM_debug_PushStack "ATM_Finalize"
# If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation.
# Copy also the same file into ATM/Restart at ARCHIVE directory for backup.
if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then
if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then
IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
# Special case : first period and no adjust => Save bands file with suffix _0
IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
fi
fi
# Add special treatement for CARBON CYCLE
if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
ATM_Carbon_Finalize
fi
echo FINALIZE ATM !
IGCM_debug_PopStack "ATM_Finalize"
}
function ATM_Carbon_Update
{
# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
IGCM_debug_PushStack "ATM_Carbon_Update"
typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
typeset PathCO2log
typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
##--Initialization of fluxes to an undefined value at the first run
UndefinedValueCo2=-9999
InitPeriodCo2=0
InitDateBeginCo2=${UndefinedValueCo2}
InitYearCo2=$(( ${year} - 1 ))
InitDateEndCo2=${InitYearCo2}1231
fCO2_ff=${UndefinedValueCo2}
CO2SBG=${UndefinedValueCo2}
CO2LU=${UndefinedValueCo2}
CO2MBG=${UndefinedValueCo2}
CO2_ppm_prec=${UndefinedValueCo2}
# Get the initial value of atmosp. pco2
CO2_ppm=${lmdz_UserChoices_co2_init}
IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
# Save CO2 values in ExeCpuLog variable contents 5 fields
echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \
gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
# Get the path where the log file co2.log is
PathCO2log=${SUBMIT_DIR}
# Get Previous line in co2.log
PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
else
# NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
# !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
#SubmitRestartPath=
if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
PathCO2log=${config_ATM_SubmitRestartPath}
Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
# Save Last Line of control in new co2.log file
InitPeriodCo2=0
InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \
gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
else
# Get restart line in co2.log
PathCO2log=${SUBMIT_DIR}
PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
# Get the value of atmosp. pco2 in co2.log
CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
fi
fi
if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
# Modify co2_ppm in config.def only for historical run
# If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm ${CO2_ppm}
fi
IGCM_debug_PopStack "ATM_Carbon_Update"
}
function ATM_Carbon_Finalize
{
# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
IGCM_debug_PushStack "ATM_Carbon_Finalize"
typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
# Fossil fuel emission
if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
# For Control, no fossil fuel emission :
fCO2_ff=0
echo "Fossil Fuel for control run :" ${fCO2_ff}
else
# For historical, get the fossile fuel file :
fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
echo "Fossil Fuel for historical run :" ${fCO2_ff}
fi
# Get the value of ocean carbon flux
CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
echo "Ocean carbon flux :" ${CO2MBG}
# Get the value of land fluxes
set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
echo "Land carbon flux (NEP) :" ${CO2SRF}
echo "LU flux (FLUC) :" ${CO2LU}
echo "Total Land carbon flux (NBP) :" ${CO2SBG}
# Previous CO2
CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
echo "Previous CO2 :" ${CO2_ppm_prec}
# Formula
CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
echo "New CO2 :" ${CO2_ppm}
# Save CO2 values in ExeCpuLog variable contents 5 fields
echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \
gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
IGCM_debug_PopStack "ATM_Carbon_Finalize"
}