#!/bin/ksh
#-----------------------------------------------------------------
function ATM_Initialize
{
IGCM_debug_PushStack "ATM_Initialize"
# Read the resolution from the variables ResolAtm set in config.card UserChoices section or from .resol file
if [ X$ResolAtm != X ] ; then
# ResolAtm is set in config.card
RESOL_ATM_3D=${ResolAtm}
elif [ -f ${SUBMIT_DIR}/../.resol ] ; then
# ResolAtm was not set in config.card, try to read .resol file
eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
else
IGCM_debug_Exit "ResolAtm is not set in config.card and the .resol file does not exist."
IGCM_debug_Verif_Exit
fi
IGCM_debug_Print 1 "The atomsopheric resolution is ${RESOL_ATM_3D} "
RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
RESOL_ATM=LMD${RESOL_ATM_X}${RESOL_ATM_Y}
##- LMDZ physics version
## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
else
LMDZ_Physics=AP
fi
echo LMDZ physics version : ${LMDZ_Physics}
##- Create_etat0_limit version
## Define variable CREATE only if it is set in lmdz.card section UserChoices.
## This variable is only used in lmdz.card to choose input files.
if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
CREATE=${lmdz_UserChoices_CREATE}
echo create_etat0_limit version : ${CREATE}
fi
## - LMDZ choice of config.def file
## ConfType must be set in lmdz.card
ConfType=${lmdz_UserChoices_ConfType}
IGCM_debug_PopStack "ATM_Initialize"
}
#-----------------------------------------------------------------
function ATM_Update
{
IGCM_debug_PushStack "ATM_Update"
##-- GHG forcing :
## If forcing file exist in run directory, read values for the current year
## and set in config.def. If not use the default value set in config.def
# Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
if [ -f SOLARANDVOLCANOES.txt ] ; then
value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def solaire $value
# Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file.
if [ -f Eccentricity.txt ] ; then
value=`grep Annee_${year} Eccentricity.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value
# Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file.
if [ -f Obliquity.txt ] ; then
value=`grep Annee_${year} Obliquity.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file Obliquity.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def R_incl $value
# Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file.
if [ -f Perihelie.txt ] ; then
value=`grep Annee_${year} Perihelie.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file Perihelie.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def R_peri $value
# Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
# Calculate co2_ppm_per as co2_ppm*4.
if [ -f CO2.txt ] ; then
value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CO2.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'`
else
value=DEFAULT
value4=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
# Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
if [ -f CH4.txt ] ; then
value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CH4.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
# Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
if [ -f N2O.txt ] ; then
value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file N2O.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
# Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
if [ -f CFC11.txt ] ; then
value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
# Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
if [ -f CFC12.txt ] ; then
value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
if [ X"${value}" = X ] ; then
# The grep returned empty variable, stop execution
IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
IGCM_debug_Verif_Exit
fi
else
value=DEFAULT
fi
IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl}
IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl}
## Activate diagnostic output files and set output_level for each file
# histmth
if [ X${lmdz_UserChoices_output_level_histmth} = X ] || [ X${lmdz_UserChoices_output_level_histmth} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level ${lmdz_UserChoices_output_level_histmth}
fi
# histday
if [ X${lmdz_UserChoices_output_level_histday} = X ] || [ X${lmdz_UserChoices_output_level_histday} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level ${lmdz_UserChoices_output_level_histday}
fi
# histmthtune
if [ X${lmdz_UserChoices_output_level_histmthtune} = X ] || [ X${lmdz_UserChoices_output_level_histmthtune} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histmthtune_lmdz.xml histmthtune enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthtune_lmdz.xml histmthtune output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histmthtune_lmdz.xml histmthtune enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthtune_lmdz.xml histmthtune output_level ${lmdz_UserChoices_output_level_histmthtune}
fi
# histdaytune
if [ X${lmdz_UserChoices_output_level_histdaytune} = X ] || [ X${lmdz_UserChoices_output_level_histdaytune} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histdaytune_lmdz.xml histday enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histdaytune_lmdz.xml histdaytune output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histdaytune_lmdz.xml histdaytune enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histdaytune_lmdz.xml histdaytune output_level ${lmdz_UserChoices_output_level_histdaytune}
fi
# histhf
if [ X${lmdz_UserChoices_output_level_histhf} = X ] || [ X${lmdz_UserChoices_output_level_histhf} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level ${lmdz_UserChoices_output_level_histhf}
fi
# histmthNMC
if [ X${lmdz_UserChoices_output_level_histmthNMC} = X ] || [ X${lmdz_UserChoices_output_level_histmthNMC} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level ${lmdz_UserChoices_output_level_histmthNMC}
fi
# histdayNMC
if [ X${lmdz_UserChoices_output_level_histdayNMC} = X ] || [ X${lmdz_UserChoices_output_level_histdayNMC} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level ${lmdz_UserChoices_output_level_histdayNMC}
fi
# histhfNMC
if [ X${lmdz_UserChoices_output_level_histhfNMC} = X ] || [ X${lmdz_UserChoices_output_level_histhfNMC} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level ${lmdz_UserChoices_output_level_histhfNMC}
fi
# histstrataer
if [ X${lmdz_UserChoices_output_level_histstrataer} = X ] || [ X${lmdz_UserChoices_output_level_histstrataer} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level ${lmdz_UserChoices_output_level_histstrataer}
fi
# histdaystrataer
if [ X${lmdz_UserChoices_output_level_histdaystrataer} = X ] || [ X${lmdz_UserChoices_output_level_histdaystrataer} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level ${lmdz_UserChoices_output_level_histdaystrataer}
fi
# histstn
if [ X${lmdz_UserChoices_output_level_histstn} = X ] || [ X${lmdz_UserChoices_output_level_histstn} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level ${lmdz_UserChoices_output_level_histstn}
fi
# histmthCOSP
if [ X${lmdz_UserChoices_output_level_histmthCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histmthCOSP} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level ${lmdz_UserChoices_output_level_histmthCOSP}
fi
# histdayCOSP
if [ X${lmdz_UserChoices_output_level_histdayCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histdayCOSP} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level ${lmdz_UserChoices_output_level_histdayCOSP}
fi
# histhfCOSP
if [ X${lmdz_UserChoices_output_level_histhfCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histhfCOSP} = XNONE ] ; then
IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled FALSE
IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level 0
else
IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled TRUE
IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level ${lmdz_UserChoices_output_level_histhfCOSP}
fi
## run.def parameters
##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
if [ ${CumulPeriod} -eq 1 ] ; then
IGCM_comp_modifyDefFile blocker run.def raz_date 1
else
IGCM_comp_modifyDefFile blocker run.def raz_date 0
fi
##-- Calendar type for LMDZ and create_etat0_limit
case ${config_UserChoices_CalendarType} in
leap|gregorian)
IGCM_comp_modifyDefFile blocker run.def calend gregorian ;;
noleap)
IGCM_comp_modifyDefFile blocker run.def calend earth_365d ;;
360d)
IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;;
*)
IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;;
esac
IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay}
IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays}
# Set anneeref different for gcm and ce0l
# Test if executable create_etat0_limit is present and lmdz.x is not present
if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
# for case ce0l : always take current year
IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
# Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
# In more recent versions of LMDZ, this will not be needed.
IGCM_comp_modifyDefFile force run.def use_filtre_fft n
else
# for case gcm : take first year of simulation
IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
fi
## Determine from the variable ListOfComponents in config.card coupling to external models
## and set corresponding parameters in run.def
echo ListOfComponents now running : ${config_ListOfComponents[*]}
if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
echo "Activate ORCHIDEE, set VEGET=y in run.def"
IGCM_comp_modifyDefFile blocker run.def VEGET y
else
echo "No ORCHIDEE, set VEGET=n in run.def"
IGCM_comp_modifyDefFile blocker run.def VEGET n
fi
if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
echo "Activate coupling to ocean, set type_ocean=couple in run.def"
IGCM_comp_modifyDefFile blocker run.def type_ocean couple
else
echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
IGCM_comp_modifyDefFile nonblocker run.def type_ocean force
fi
if [ X${config_UserChoices_ConfigType} = XESMCO2AER ] ; then
echo "ESM config, with INCA and CO2i, set type_trac=inco in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac inco
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
elif [ X${config_ListOfComponents_CHM} = Xinca ] ; then
echo "Activate coupling to INCA, set type_trac=inca in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac inca
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac repr
IGCM_comp_modifyDefFile blocker run.def config_inca none
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
elif [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
echo "ESM config, set type_trac=co2i in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac co2i
IGCM_comp_modifyDefFile blocker run.def config_inca none
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
elif [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coag in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac coag
IGCM_comp_modifyDefFile blocker run.def config_inca none
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
else
echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
IGCM_comp_modifyDefFile blocker run.def config_inca none
IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 0
fi
# run.def : Activate the new calving
if [ ! X${lmdz_UserChoices_cpl_old_calving} = X ]; then
IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving ${lmdz_UserChoices_cpl_old_calving}
else
IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving y
fi
# physiq.def : Activate the call to phytrac
if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then
IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac ${lmdz_UserChoices_ok_bug_cv_trac}
else
IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac n
fi
# config.def : Activate aerosol strato
if [ ! X${lmdz_UserChoices_flag_aerosol_strat} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat ${lmdz_UserChoices_flag_aerosol_strat}
else
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat DEFAULT
fi
# config.def : Activate direct radiative effect if ok_ade=y
if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
fi
# config.def : Activate indirect radiative effect if ok_aie=y
if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
fi
# config.def : Activate online aerosol coupled model if aerosol_couple=y
if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
else
IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
fi
# config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y
if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple}
else
IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n
fi
# config.def : Activate reading of ozone in climatology if read_climoz=2
if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
else
IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0
fi
# config.def : Choose aerosol use in radiative effect
# type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only
# =5 => dust only =6 => all aerosol
if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
else
IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
fi
# config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
fi
# config.def : Activate COSP
if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
else
IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
fi
# config.def : Modify parameter pmagic if it is set in lmdz.card
if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
else
# Take default value set in config.def
IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
fi
if ( [ X${config_UserChoices_ConfigType} = XESMCO2 ] || [ X${config_UserChoices_ConfigType} = XESMCO2AER ] ) ; then
# Set carbon cycle parameters according to parmeters in lmdz.card
IGCM_comp_modifyDefFile blocker config.def level_coupling_esm 2
IGCM_comp_modifyDefFile blocker config.def carbon_cycle_cpl ${lmdz_UserChoices_carbon_cycle_cpl}
IGCM_comp_modifyDefFile blocker config.def carbon_cycle_tr ${lmdz_UserChoices_carbon_cycle_tr}
IGCM_comp_modifyDefFile blocker config.def carbon_cycle_rad ${lmdz_UserChoices_carbon_cycle_rad}
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 ${lmdz_UserChoices_co2_ppm0}
else
# Take default value set in config.def
IGCM_comp_modifyDefFile nonblocker config.def level_coupling_esm DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_cpl DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_tr DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_rad DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 DEFAULT
fi
if ( [ X${config_UserChoices_ConfigType} = XESMCO2 ] ) ; then
# Set carbon cycle parameters according to parmeters in lmdz.card
IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor ${lmdz_UserChoices_read_fco2_ocean_cor}
IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor ${lmdz_UserChoices_var_fco2_ocean_cor}
IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor ${lmdz_UserChoices_read_fco2_land_cor}
IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor ${lmdz_UserChoices_var_fco2_land_cor}
else
IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor DEFAULT
IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor DEFAULT
fi
# config.def : Modify parameter ok_volcan if ok_volcan=y or LMDZ_strataero=y in lmdz.card
# Note: ok_volcan is a flag allowing a double-call with/without natural forcing (instead of with/without anthro forcing).
if [ ! X${lmdz_UserChoices_ok_volcan} = X ] || [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
IGCM_comp_modifyDefFile nonblocker config.def ok_volcan ${lmdz_UserChoices_ok_volcan}
else
# Take default value set in config.def
IGCM_comp_modifyDefFile nonblocker config.def ok_volcan DEFAULT
fi
# physiq.def : Modify parameter tau_gl if it is set in lmdz.card
if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then
IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl}
else
# Take default value set in physiq.def
IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT
fi
# guide.def : Activate nudging if ok_guide=y set in lmdz.card
if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide}
else
IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
fi
## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
IGCM_sys_Mv gcm.def.tmp gcm.def
echo
IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
echo
cat gcm.def
ByPass_hgardfou_teta=n
export lmdz_UserChoices_ByPass_hgardfou_teta=n
IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
fi
## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
IGCM_sys_Mv gcm.def.tmp gcm.def
echo
IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
echo
cat gcm.def
ByPass_hgardfou_mats=n
export lmdz_UserChoices_ByPass_hgardfou_mats=n
IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
fi
# Add include of LMDZ context in iodef.xml
# In iodef.xml add on the next line after "COMPONENT CONTEXT"
echo '' > add.tmp
# Add inclusion of file context_input_lmdz.xml if this file exists
if [ -f context_input_lmdz.xml ] ; then
echo '' >> add.tmp
fi
# Include xml files for output configuration if running with workflow CMIP6
if ( [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] || [ X${config_Post_dr2xmlIPSL} = XTRUE ] ) ; then
echo '' >> add.tmp
echo '' >> add.tmp
fi
cp iodef.xml iodef.xml.tmp
sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
rm iodef.xml.tmp add.tmp
#Long Name as global attribute (if LongName is not empty)
if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
listfile=$(ls file_def*lmdz.xml)
echo "${config_UserChoices_LongName}" > add.tmp
for file in ${listfile}
do
cp ${file} ${file}.tmp
sed -e "/ ${file}
rm ${file}.tmp
done
rm add.tmp
fi
# Compression level (if CompressionLevel is not empty)
if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then
echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel}
listfile=$(ls file_def*lmdz.xml)
for file in ${listfile} ; do
sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file}
done
fi
IGCM_debug_PopStack "ATM_Update"
}
#-----------------------------------
function ATM_Finalize
{
IGCM_debug_PushStack "ATM_Finalize"
IGCM_debug_Print 1 "FINALIZE ATM !"
IGCM_debug_PopStack "ATM_Finalize"
}