source: CONFIG/UNIFORM/v6/IPSLCM6.3/GENERAL/DRIVER/lmdz.driver

Last change on this file was 6664, checked in by acosce, 8 months ago

update IPSLCM6.3 configuration
1- remove option ESMCO2 from compilation
2- add option multi_sources_nat for futur commit in INCA
File size: 27.9 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function ATM_Initialize
4{
5    IGCM_debug_PushStack "ATM_Initialize"
6
7    # Read the resolution from the variables ResolAtm set in config.card UserChoices section or from .resol file
8    if [ X$ResolAtm != X ] ; then
9        # ResolAtm is set in config.card
10        RESOL_ATM_3D=${ResolAtm}
11    elif [ -f ${SUBMIT_DIR}/../.resol ] ; then
12        # ResolAtm was not set in config.card, try to read .resol file
13        eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
14    else
15        IGCM_debug_Exit "ResolAtm is not set in config.card and the .resol file does not exist."
16        IGCM_debug_Verif_Exit
17    fi
18   
19    IGCM_debug_Print 1 "The atomsopheric resolution is ${RESOL_ATM_3D} " 
20
21    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
22    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
23    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
24    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
25    RESOL_ATM=LMD${RESOL_ATM_X}${RESOL_ATM_Y}
26
27    ##- LMDZ physics version
28    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
29    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
30        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
31    else
32        LMDZ_Physics=AP
33    fi
34    echo LMDZ physics version : ${LMDZ_Physics}
35
36    ##- Create_etat0_limit version
37    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
38    ##  This variable is only used in lmdz.card to choose input files.
39    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
40        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
41        CREATE=${lmdz_UserChoices_CREATE}
42        echo create_etat0_limit version : ${CREATE}
43    fi
44
45
46    ## - LMDZ choice of config.def file
47    ##   ConfType must be set in lmdz.card
48    ConfType=${lmdz_UserChoices_ConfType}
49
50    IGCM_debug_PopStack "ATM_Initialize"
51}
52
53#-----------------------------------------------------------------
54function ATM_Update
55{
56    IGCM_debug_PushStack "ATM_Update"
57
58    ##-- GHG forcing :
59    ##   If forcing file exist in run directory, read values for the current year
60    ##   and set in config.def. If not use the default value set in config.def
61
62    # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
63    IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
64    IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
65    if [ -f SOLARANDVOLCANOES.txt ] ; then
66        value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
67        if [ X"${value}" = X ] ; then
68            # The grep returned empty variable, stop execution
69            IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
70            IGCM_debug_Verif_Exit
71        fi
72    else
73        value=DEFAULT
74    fi
75    IGCM_comp_modifyDefFile nonblocker config.def solaire $value
76
77    # Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file.
78    if [ -f Eccentricity.txt ] ; then
79        value=`grep Annee_${year} Eccentricity.txt | awk -F= '{print $2}'`
80        if [ X"${value}" = X ] ; then
81            # The grep returned empty variable, stop execution
82            IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year."
83            IGCM_debug_Verif_Exit
84        fi
85    else
86        value=DEFAULT
87    fi
88    IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value
89
90    # Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file.
91    if [ -f Obliquity.txt ] ; then
92        value=`grep Annee_${year} Obliquity.txt | awk -F= '{print $2}'`
93        if [ X"${value}" = X ] ; then
94            # The grep returned empty variable, stop execution
95            IGCM_debug_Exit "The file Obliquity.txt do not contain the current year."
96            IGCM_debug_Verif_Exit
97        fi
98    else
99        value=DEFAULT
100    fi
101    IGCM_comp_modifyDefFile nonblocker config.def R_incl $value
102
103    # Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file.
104    if [ -f Perihelie.txt ] ; then
105        value=`grep Annee_${year} Perihelie.txt | awk -F= '{print $2}'`
106        if [ X"${value}" = X ] ; then
107            # The grep returned empty variable, stop execution
108            IGCM_debug_Exit "The file Perihelie.txt do not contain the current year."
109            IGCM_debug_Verif_Exit
110        fi
111    else
112        value=DEFAULT
113    fi
114    IGCM_comp_modifyDefFile nonblocker config.def R_peri $value
115
116    # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
117    # Calculate co2_ppm_per as co2_ppm*4.
118    if [ -f CO2.txt ] ; then
119        value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
120        if [ X"${value}" = X ] ; then
121            # The grep returned empty variable, stop execution
122            IGCM_debug_Exit "The file CO2.txt do not contain the current year."
123            IGCM_debug_Verif_Exit
124        fi
125        value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'`
126    else
127        value=DEFAULT
128        value4=DEFAULT
129    fi
130    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
131    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
132
133
134    # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
135    if [ -f CH4.txt ] ; then
136        value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
137        if [ X"${value}" = X ] ; then
138            # The grep returned empty variable, stop execution
139            IGCM_debug_Exit "The file CH4.txt do not contain the current year."
140            IGCM_debug_Verif_Exit
141        fi
142    else
143        value=DEFAULT
144    fi
145    IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
146
147
148    # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
149    if [ -f N2O.txt ] ; then
150        value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
151        if [ X"${value}" = X ] ; then
152            # The grep returned empty variable, stop execution
153            IGCM_debug_Exit "The file N2O.txt do not contain the current year."
154            IGCM_debug_Verif_Exit
155        fi
156    else
157        value=DEFAULT
158    fi
159    IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
160
161    # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
162    if [ -f CFC11.txt ] ; then
163        value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
164        if [ X"${value}" = X ] ; then
165            # The grep returned empty variable, stop execution
166            IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
167            IGCM_debug_Verif_Exit
168        fi
169    else
170        value=DEFAULT
171    fi
172    IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
173
174
175    # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
176    if [ -f CFC12.txt ] ; then
177        value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
178        if [ X"${value}" = X ] ; then
179            # The grep returned empty variable, stop execution
180            IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
181            IGCM_debug_Verif_Exit
182        fi
183    else
184        value=DEFAULT
185    fi
186    IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
187
188
189    ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
190    LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
191    IGCM_debug_Print 3 "LMDZ_t_coupl "   ${LMDZ_t_coupl}
192    IGCM_comp_modifyDefFile nonblocker config.def t_coupl   ${LMDZ_t_coupl} 
193
194
195
196    ## Activate diagnostic output files and set output_level for each file
197
198    # histmth
199    if [ X${lmdz_UserChoices_output_level_histmth} = X ] || [ X${lmdz_UserChoices_output_level_histmth} = XNONE ] ; then
200        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled FALSE
201        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 0
202    else
203        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled TRUE
204        IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level ${lmdz_UserChoices_output_level_histmth} 
205    fi
206
207    # histday
208    if [ X${lmdz_UserChoices_output_level_histday} = X ] || [ X${lmdz_UserChoices_output_level_histday} = XNONE ] ; then
209        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled FALSE
210        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 0
211    else
212        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled TRUE
213        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level ${lmdz_UserChoices_output_level_histday} 
214    fi
215
216    # histhf
217    if [ X${lmdz_UserChoices_output_level_histhf} = X ] || [ X${lmdz_UserChoices_output_level_histhf} = XNONE ] ; then
218        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled FALSE
219        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 0
220    else
221        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled TRUE
222        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level ${lmdz_UserChoices_output_level_histhf} 
223    fi
224
225    # histmthNMC
226    if [ X${lmdz_UserChoices_output_level_histmthNMC} = X ] || [ X${lmdz_UserChoices_output_level_histmthNMC} = XNONE ] ; then
227        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled FALSE
228        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level 0
229    else
230        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled TRUE
231        IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC output_level ${lmdz_UserChoices_output_level_histmthNMC} 
232    fi
233
234    # histdayNMC
235    if [ X${lmdz_UserChoices_output_level_histdayNMC} = X ] || [ X${lmdz_UserChoices_output_level_histdayNMC} = XNONE ] ; then
236        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled FALSE
237        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level 0
238    else
239        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled TRUE
240        IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC output_level ${lmdz_UserChoices_output_level_histdayNMC} 
241    fi
242
243    # histhfNMC
244    if [ X${lmdz_UserChoices_output_level_histhfNMC} = X ] || [ X${lmdz_UserChoices_output_level_histhfNMC} = XNONE ] ; then
245        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled FALSE
246        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level 0
247    else
248        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled TRUE
249        IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC output_level ${lmdz_UserChoices_output_level_histhfNMC} 
250    fi
251
252    # histstrataer
253    if [ X${lmdz_UserChoices_output_level_histstrataer} = X ] || [ X${lmdz_UserChoices_output_level_histstrataer} = XNONE ] ; then
254        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled FALSE
255        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level 0
256    else
257        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled TRUE
258        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer output_level ${lmdz_UserChoices_output_level_histstrataer} 
259    fi
260
261    # histdaystrataer
262    if [ X${lmdz_UserChoices_output_level_histdaystrataer} = X ] || [ X${lmdz_UserChoices_output_level_histdaystrataer} = XNONE ] ; then
263        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled FALSE
264        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level 0
265    else
266        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled TRUE
267        IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer output_level ${lmdz_UserChoices_output_level_histdaystrataer}
268    fi
269
270    # histstn
271    if [ X${lmdz_UserChoices_output_level_histstn} = X ] || [ X${lmdz_UserChoices_output_level_histstn} = XNONE ] ; then
272        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled FALSE
273        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level 0
274    else
275        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled TRUE
276        IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn output_level ${lmdz_UserChoices_output_level_histstn} 
277    fi
278
279
280    # histmthCOSP
281    if [ X${lmdz_UserChoices_output_level_histmthCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histmthCOSP} = XNONE ] ; then
282        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled FALSE
283        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level 0
284    else
285        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled TRUE
286        IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP output_level ${lmdz_UserChoices_output_level_histmthCOSP} 
287    fi
288
289
290    # histdayCOSP
291    if [ X${lmdz_UserChoices_output_level_histdayCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histdayCOSP} = XNONE ] ; then
292        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled FALSE
293        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level 0
294    else
295        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled TRUE
296        IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP output_level ${lmdz_UserChoices_output_level_histdayCOSP} 
297    fi
298
299
300    # histhfCOSP
301    if [ X${lmdz_UserChoices_output_level_histhfCOSP} = X ] || [ X${lmdz_UserChoices_output_level_histhfCOSP} = XNONE ] ; then
302        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled FALSE
303        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level 0
304    else
305        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled TRUE
306        IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP output_level ${lmdz_UserChoices_output_level_histhfCOSP} 
307    fi
308
309
310    ## run.def parameters
311
312
313    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
314    if [ ${CumulPeriod} -eq 1 ] ; then
315        IGCM_comp_modifyDefFile blocker run.def raz_date  1
316    else
317        IGCM_comp_modifyDefFile blocker run.def raz_date  0
318    fi
319
320    ##-- Calendar type for LMDZ and create_etat0_limit
321    case ${config_UserChoices_CalendarType} in
322        leap|gregorian)
323            IGCM_comp_modifyDefFile blocker run.def calend  gregorian ;;
324        noleap)
325            IGCM_comp_modifyDefFile blocker run.def calend  earth_365d ;;
326        360d)
327            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
328        *)
329            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
330    esac
331
332    IGCM_comp_modifyDefFile blocker run.def dayref    ${InitDay}
333    IGCM_comp_modifyDefFile blocker run.def nday      ${PeriodLengthInDays}
334
335    # Set anneeref different for gcm and ce0l
336    # Test if executable create_etat0_limit is present and lmdz.x is not present
337    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
338        # for case ce0l : always take current year
339        IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
340
341        # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
342        # In more recent versions of LMDZ, this will not be needed.
343        IGCM_comp_modifyDefFile force   run.def use_filtre_fft n
344    else
345        # for case gcm : take first year of simulation
346        IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
347    fi
348
349    ## Determine from the variable ListOfComponents in config.card coupling to external models
350    ## and set corresponding parameters in run.def
351    echo ListOfComponents now running : ${config_ListOfComponents[*]}
352
353    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
354        echo "Activate ORCHIDEE, set VEGET=y in run.def"
355        IGCM_comp_modifyDefFile blocker run.def VEGET y
356    else
357        echo "No ORCHIDEE, set VEGET=n in run.def"
358        IGCM_comp_modifyDefFile blocker run.def VEGET n
359    fi
360
361    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
362        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
363        IGCM_comp_modifyDefFile blocker run.def type_ocean couple
364    else
365        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
366        IGCM_comp_modifyDefFile nonblocker run.def type_ocean force
367    fi
368
369    if   [ X${config_ListOfComponents_CHM} = Xinca ] && [ X${ConfigType:0:6} = XESMCO2 ] ; then
370        echo "ESM config, with INCA and CO2i, set type_trac=inco in run.def"
371        IGCM_comp_modifyDefFile blocker run.def type_trac inco
372        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
373        # Add CO2 in tracer.def to coupled inca and lmdz_co2
374        echo '&co2i' >> tracer.def
375        echo 'default hadv=10 vadv=10 phases=g type=tracer parent=air' >> tracer.def
376        echo 'CO2' >> tracer.def
377    elif [ X${config_ListOfComponents_CHM} = Xinca ] ; then
378        echo "Activate coupling to INCA, set type_trac=inca in run.def"
379        IGCM_comp_modifyDefFile blocker run.def type_trac inca
380        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1 
381    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
382        echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
383        IGCM_comp_modifyDefFile blocker run.def type_trac repr
384        IGCM_comp_modifyDefFile blocker run.def config_inca none
385        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1 
386    elif [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
387        echo "ESM config, set type_trac=co2i in run.def"
388        IGCM_comp_modifyDefFile blocker run.def type_trac co2i
389        IGCM_comp_modifyDefFile blocker run.def config_inca none
390    IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
391    elif [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
392        echo "No coupling to chemistry model but it is a LMDZ STRATAER configuration, set type_trac=coag in run.def"
393        IGCM_comp_modifyDefFile blocker run.def type_trac coag
394        IGCM_comp_modifyDefFile blocker run.def config_inca none
395        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1 
396    else
397        echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
398        IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
399        IGCM_comp_modifyDefFile blocker run.def config_inca none
400        IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 0
401    fi
402
403    # run.def : Activate the new calving
404    if [ ! X${lmdz_UserChoices_cpl_old_calving} = X ]; then
405        IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving ${lmdz_UserChoices_cpl_old_calving}
406    else
407        IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving y
408    fi 
409
410    # physiq.def : Activate the call to phytrac
411    if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then
412        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  ${lmdz_UserChoices_ok_bug_cv_trac}
413    else
414        IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac  n
415    fi 
416
417    # config.def : Activate aerosol strato
418    if [ ! X${lmdz_UserChoices_flag_aerosol_strat} = X ]; then
419        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat ${lmdz_UserChoices_flag_aerosol_strat}
420    else
421        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat DEFAULT
422    fi 
423
424    # config.def : Activate direct radiative effect if ok_ade=y
425    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
426        IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
427    else
428        IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
429    fi 
430
431    # config.def : Activate indirect radiative effect if ok_aie=y
432    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
433        IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
434    else
435        IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
436    fi 
437
438    # config.def : Activate online aerosol coupled model if aerosol_couple=y
439    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
440        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
441    else
442        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
443    fi 
444
445    # config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y
446    if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then
447        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple}
448    else
449        IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n
450    fi 
451
452    # config.def : Activate reading of ozone in climatology if read_climoz=2
453    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
454        IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
455    else
456        IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0     
457    fi 
458
459    # config.def : Choose aerosol use in radiative effect
460    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only
461    # =5 => dust only =6 => all aerosol   
462    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
463        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
464    else
465        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
466    fi 
467
468    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
469    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
470        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
471    else
472        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
473    fi 
474
475    # config.def : Activate COSP
476    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
477        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
478    else
479        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
480    fi 
481
482    # config.def : Modify parameter pmagic if it is set in lmdz.card
483    if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
484        IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
485    else
486        # Take default value set in config.def
487        IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
488    fi
489
490    if (  [ X${ConfigType:0:3} = XESM ]  ) ; then
491        # Set carbon cycle parameters according to parmeters in lmdz.card
492        IGCM_comp_modifyDefFile blocker config.def level_coupling_esm 2
493        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_cpl ${lmdz_UserChoices_carbon_cycle_cpl} 
494        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_tr ${lmdz_UserChoices_carbon_cycle_tr}
495        IGCM_comp_modifyDefFile blocker config.def carbon_cycle_rad ${lmdz_UserChoices_carbon_cycle_rad}
496        IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 ${lmdz_UserChoices_co2_ppm0} 
497    else
498        # Take default value set in config.def
499        IGCM_comp_modifyDefFile nonblocker config.def level_coupling_esm DEFAULT
500        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_cpl DEFAULT
501        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_tr DEFAULT
502        IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_rad DEFAULT
503        IGCM_comp_modifyDefFile nonblocker config.def co2_ppm0 DEFAULT
504    fi
505
506    if ( [ X${config_UserChoices_ConfigType} = XESMCO2 ] ) ; then
507        # Set carbon cycle parameters according to parmeters in lmdz.card
508        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor ${lmdz_UserChoices_read_fco2_ocean_cor}
509        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor ${lmdz_UserChoices_var_fco2_ocean_cor}
510        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor ${lmdz_UserChoices_read_fco2_land_cor}
511        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor ${lmdz_UserChoices_var_fco2_land_cor}
512    else
513        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_ocean_cor DEFAULT
514        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_ocean_cor DEFAULT
515        IGCM_comp_modifyDefFile nonblocker config.def read_fco2_land_cor DEFAULT
516        IGCM_comp_modifyDefFile nonblocker config.def var_fco2_land_cor DEFAULT
517    fi
518
519    # config.def : Modify parameter ok_volcan if ok_volcan=y or LMDZ_strataero=y in lmdz.card
520    # Note: ok_volcan is a flag allowing a double-call with/without natural forcing (instead of with/without anthro forcing).
521    if [ ! X${lmdz_UserChoices_ok_volcan} = X ] || [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
522        IGCM_comp_modifyDefFile nonblocker config.def ok_volcan ${lmdz_UserChoices_ok_volcan}
523    else
524        # Take default value set in config.def
525        IGCM_comp_modifyDefFile nonblocker config.def ok_volcan DEFAULT
526    fi
527
528    # physiq.def : Modify parameter tau_gl if it is set in lmdz.card
529    if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then
530        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl}
531    else
532        # Take default value set in physiq.def
533        IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT
534    fi
535   
536
537    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
538    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
539        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
540    else
541        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
542    fi
543
544
545    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
546    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
547    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
548        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
549        IGCM_sys_Mv gcm.def.tmp gcm.def
550        echo
551        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
552        echo
553        cat gcm.def
554        ByPass_hgardfou_teta=n
555    export lmdz_UserChoices_ByPass_hgardfou_teta=n
556        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
557    fi
558
559    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
560    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
561    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
562        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
563        IGCM_sys_Mv gcm.def.tmp gcm.def
564        echo
565        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
566        echo
567        cat gcm.def
568        ByPass_hgardfou_mats=n
569        export lmdz_UserChoices_ByPass_hgardfou_mats=n
570        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
571    fi
572
573    # Add include of LMDZ context in iodef.xml
574    # In iodef.xml add on the next line after "COMPONENT CONTEXT"
575    echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
576    # Add inclusion of file context_input_lmdz.xml if this file exists
577    if [ -f context_input_lmdz.xml ] ; then
578        echo '<context id="LMDZ" src="./context_input_lmdz.xml"/>' >> add.tmp
579    fi
580    # Include xml files for output configuration if running with workflow CMIP6
581    if ( [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] || [ X${config_Post_dr2xmlIPSL} = XTRUE ] ) ; then
582        echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
583    echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
584    fi
585    cp iodef.xml iodef.xml.tmp
586    sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
587    rm iodef.xml.tmp add.tmp
588
589    #Long Name as global attribute (if LongName is not empty)
590    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
591        listfile=$(ls file_def*lmdz.xml)
592        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
593        for file in ${listfile}
594        do
595            cp ${file} ${file}.tmp
596            sed -e "/<file id/r add.tmp" \
597                ${file}.tmp > ${file}
598            rm ${file}.tmp
599        done
600        rm add.tmp
601    fi
602
603    # Compression level (if CompressionLevel is not empty)
604    if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then
605    echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel}
606    listfile=$(ls file_def*lmdz.xml)
607    for file in ${listfile} ; do
608        sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file}
609    done
610    fi
611
612           
613    IGCM_debug_PopStack "ATM_Update"
614}
615
616#-----------------------------------
617function ATM_Finalize
618{
619    IGCM_debug_PushStack "ATM_Finalize"
620
621    IGCM_debug_Print 1 "FINALIZE ATM !"
622
623    IGCM_debug_PopStack "ATM_Finalize"
624}
625
Note: See TracBrowser for help on using the repository browser.