[396] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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| 3 | function ATM_Initialize |
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| 4 | { |
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| 5 | IGCM_debug_PushStack "ATM_Initialize" |
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| 6 | |
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[671] | 7 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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[396] | 8 | |
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[2275] | 9 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39 |
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[396] | 10 | |
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[659] | 11 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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[1802] | 12 | RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' ) |
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| 13 | RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' ) |
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| 14 | RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}" |
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[649] | 15 | |
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[1541] | 16 | ##- LMDZ physics version |
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| 17 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 18 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 19 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 20 | else |
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| 21 | LMDZ_Physics=AP |
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| 22 | fi |
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| 23 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 24 | |
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[1643] | 25 | ##- Create_etat0_limit version |
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[1782] | 26 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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| 27 | ## This variable is only used in lmdz.card to choose input files. |
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| 28 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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| 29 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 30 | CREATE=${lmdz_UserChoices_CREATE} |
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| 31 | echo create_etat0_limit version : ${CREATE} |
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| 32 | fi |
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[1643] | 33 | |
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[1782] | 34 | |
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[1550] | 35 | ## - LMDZ choice of config.def file |
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| 36 | ## ConfType must be set in lmdz.card |
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| 37 | ConfType=${lmdz_UserChoices_ConfType} |
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[1541] | 38 | |
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[1550] | 39 | ##- LMDZ output level, to be set in lmdz.card |
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| 40 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 41 | # OutLevel is not set. Take default value low. |
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| 42 | OutLevel=low |
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| 43 | else |
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| 44 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 45 | fi |
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| 46 | |
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[1539] | 47 | ##-- Output frequency purpose .... |
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[396] | 48 | ##-- Initialisation .... |
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[2758] | 49 | ok_mensuel=.FALSE. |
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| 50 | ok_journe=.FALSE. |
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| 51 | ok_hf=.FALSE. |
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| 52 | ok_hf3h=.FALSE. |
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| 53 | ok_hf3hm=.FALSE. |
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| 54 | ok_stn=.FALSE. |
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[396] | 55 | |
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| 56 | case ${config_UserChoices_PeriodLength} in |
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[2758] | 57 | 1Y|1y|1M|1m) ok_mensuel=.TRUE. ;; |
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| 58 | 5D|5d|1D|1d) ok_journe=.TRUE. ;; |
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[396] | 59 | esac |
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| 60 | |
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| 61 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 62 | case ${frequency} in |
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[2758] | 63 | 1M|1m) ok_mensuel=.TRUE. ;; |
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[396] | 64 | esac |
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| 65 | case ${frequency} in |
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[2758] | 66 | 5D|5d|1D|1d) ok_journe=.TRUE. ;; |
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[1539] | 67 | esac |
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| 68 | case ${frequency} in |
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[2758] | 69 | HF|hf) ok_hf=.TRUE. ;; |
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[396] | 70 | esac |
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[1539] | 71 | case ${frequency} in |
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[2758] | 72 | HF3h|hf3h) ok_hf3h=.TRUE. ;; |
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[1539] | 73 | esac |
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| 74 | case ${frequency} in |
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[2758] | 75 | HF3hm|hf3hm) ok_hf3hm=.TRUE. ;; |
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[1539] | 76 | esac |
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| 77 | case ${frequency} in |
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[2758] | 78 | STN|stn) ok_stn=.TRUE. ;; |
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[1539] | 79 | esac |
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[396] | 80 | done |
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| 81 | |
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[1783] | 82 | ## Read LMDZ_COSP_OK in lmdz.card |
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[2758] | 83 | if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then |
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| 84 | ## LMDZ_COSP_OK=y, now read all other COSP variables |
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| 85 | ## Read LMDZ_COSP_monthly in lmdz.card |
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| 86 | if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then |
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| 87 | LMDZ_COSP_monthly=.TRUE. |
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| 88 | else |
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| 89 | LMDZ_COSP_monthly=.FALSE. |
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| 90 | fi |
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| 91 | ## Read LMDZ_COSP_daily in lmdz.card |
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| 92 | if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then |
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| 93 | LMDZ_COSP_daily=.TRUE. |
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| 94 | else |
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| 95 | LMDZ_COSP_daily=.FALSE. |
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| 96 | fi |
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| 97 | ## Read LMDZ_COSP_hf in lmdz.card |
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| 98 | if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then |
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| 99 | LMDZ_COSP_hf=.TRUE. |
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| 100 | else |
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| 101 | LMDZ_COSP_hf=.FALSE. |
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| 102 | fi |
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[1783] | 103 | else |
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[2758] | 104 | # LMDZ_COSP_OK=n : All cosp output are deactivated |
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| 105 | LMDZ_COSP_monthly=.FALSE. |
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| 106 | LMDZ_COSP_daily=.FALSE. |
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| 107 | LMDZ_COSP_hf=.FALSE. |
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| 108 | fi |
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[1000] | 109 | |
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[1783] | 110 | ## Read LMDZ_NMC_monthly in lmdz.card |
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[2758] | 111 | if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then |
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| 112 | LMDZ_NMC_monthly=.TRUE. |
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[1783] | 113 | else |
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[2758] | 114 | LMDZ_NMC_monthly=.FALSE. |
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[1783] | 115 | fi |
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[2758] | 116 | |
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[1783] | 117 | ## Read LMDZ_NMC_daily in lmdz.card |
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[2758] | 118 | if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then |
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| 119 | LMDZ_NMC_daily=.TRUE. |
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[1783] | 120 | else |
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[2758] | 121 | LMDZ_NMC_daily=.FALSE. |
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[1783] | 122 | fi |
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| 123 | |
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| 124 | ## Read LMDZ_NMC_hf in lmdz.card |
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[2758] | 125 | if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then |
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| 126 | LMDZ_NMC_hf=.TRUE. |
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[1783] | 127 | else |
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[2758] | 128 | LMDZ_NMC_hf=.FALSE. |
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[1783] | 129 | fi |
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[2758] | 130 | |
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[1783] | 131 | |
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[396] | 132 | IGCM_debug_PopStack "ATM_Initialize" |
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| 133 | } |
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| 134 | |
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| 135 | #----------------------------------------------------------------- |
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| 136 | function ATM_Update |
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| 137 | { |
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| 138 | IGCM_debug_PushStack "ATM_Update" |
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| 139 | |
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[1535] | 140 | ##-- GHG forcing : |
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[2321] | 141 | ## If forcing file exist in run directory, read values for the current year |
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| 142 | ## and set in config.def. If not use the default value set in config.def |
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[2343] | 143 | |
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| 144 | # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 145 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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[2343] | 146 | value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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| 147 | if [ X"${value}" = X ] ; then |
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[2321] | 148 | # The grep returned empty variable, stop execution |
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| 149 | IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year." |
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| 150 | IGCM_debug_Verif_Exit |
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| 151 | fi |
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[1690] | 152 | else |
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[2343] | 153 | value=DEFAULT |
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[1535] | 154 | fi |
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[2343] | 155 | IGCM_comp_modifyDefFile nonblocker config.def solaire $value |
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[2321] | 156 | |
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[2343] | 157 | |
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| 158 | # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 159 | if [ -f CO2.txt ] ; then |
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[2343] | 160 | value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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| 161 | if [ X"${value}" = X ] ; then |
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[2321] | 162 | # The grep returned empty variable, stop execution |
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| 163 | IGCM_debug_Exit "The file CO2.txt do not contain the current year." |
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| 164 | IGCM_debug_Verif_Exit |
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| 165 | fi |
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[1690] | 166 | else |
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[2343] | 167 | value=DEFAULT |
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[1535] | 168 | fi |
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[2343] | 169 | IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value |
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[1690] | 170 | |
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[2343] | 171 | |
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| 172 | # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 173 | if [ -f CH4.txt ] ; then |
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[2343] | 174 | value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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| 175 | if [ X"${value}" = X ] ; then |
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[2321] | 176 | # The grep returned empty variable, stop execution |
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| 177 | IGCM_debug_Exit "The file CH4.txt do not contain the current year." |
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| 178 | IGCM_debug_Verif_Exit |
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| 179 | fi |
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[2343] | 180 | else |
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| 181 | value=DEFAULT |
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[1535] | 182 | fi |
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[2343] | 183 | IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value |
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[2321] | 184 | |
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[2343] | 185 | |
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| 186 | # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 187 | if [ -f N2O.txt ] ; then |
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[2343] | 188 | value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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| 189 | if [ X"${value}" = X ] ; then |
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[2321] | 190 | # The grep returned empty variable, stop execution |
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| 191 | IGCM_debug_Exit "The file N2O.txt do not contain the current year." |
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| 192 | IGCM_debug_Verif_Exit |
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| 193 | fi |
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[1690] | 194 | else |
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[2343] | 195 | value=DEFAULT |
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[1535] | 196 | fi |
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[2343] | 197 | IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value |
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[2321] | 198 | |
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[2343] | 199 | # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 200 | if [ -f CFC11.txt ] ; then |
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[2343] | 201 | value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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| 202 | if [ X"${value}" = X ] ; then |
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[2321] | 203 | # The grep returned empty variable, stop execution |
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| 204 | IGCM_debug_Exit "The file CFC11.txt do not contain the current year." |
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| 205 | IGCM_debug_Verif_Exit |
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| 206 | fi |
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[1690] | 207 | else |
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[2343] | 208 | value=DEFAULT |
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[1535] | 209 | fi |
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[2343] | 210 | IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value |
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[2321] | 211 | |
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[2343] | 212 | |
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| 213 | # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file. |
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[1535] | 214 | if [ -f CFC12.txt ] ; then |
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[2343] | 215 | value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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| 216 | if [ X"${value}" = X ] ; then |
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[2321] | 217 | # The grep returned empty variable, stop execution |
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| 218 | IGCM_debug_Exit "The file CFC12.txt do not contain the current year." |
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| 219 | IGCM_debug_Verif_Exit |
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| 220 | fi |
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[1690] | 221 | else |
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[2343] | 222 | value=DEFAULT |
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[1535] | 223 | fi |
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[2343] | 224 | IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value |
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[1535] | 225 | |
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[2321] | 226 | |
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[2343] | 227 | ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400 |
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| 228 | LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400} |
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[2275] | 229 | IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl} |
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[2343] | 230 | IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl} |
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[1780] | 231 | |
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| 232 | ##-- Add special treatement for CARBON CYCLE |
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[1546] | 233 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1780] | 234 | ATM_Carbon_Update |
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| 235 | fi |
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[1537] | 236 | |
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| 237 | |
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[1538] | 238 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 239 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 240 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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[2758] | 241 | LMDZ_COSP_daily=.TRUE. |
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[1538] | 242 | fi |
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[1537] | 243 | |
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[2758] | 244 | ## Modifiy |
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| 245 | IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel} |
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| 246 | |
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| 247 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe} |
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| 248 | |
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| 249 | if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then |
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| 250 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2 |
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| 251 | else |
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| 252 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5 |
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[2582] | 253 | fi |
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[2758] | 254 | |
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| 255 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf} |
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| 256 | |
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| 257 | if [ X${OutLevel} = Xlow ] ; then |
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| 258 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5 |
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| 259 | elif [ X${OutLevel} = Xmedium ] ; then |
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| 260 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6 |
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| 261 | elif [ X${OutLevel} = Xhigh ] ; then |
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| 262 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7 |
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[2582] | 263 | fi |
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[2758] | 264 | |
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| 265 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h} |
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| 266 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm} |
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[2300] | 267 | |
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[2758] | 268 | IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn} |
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| 269 | |
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| 270 | IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly} |
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| 271 | IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily} |
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| 272 | IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf} |
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| 273 | |
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| 274 | IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly} |
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| 275 | IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily} |
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| 276 | IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf} |
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| 277 | |
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| 278 | |
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[1544] | 279 | ## gcm.def parameters : |
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[2343] | 280 | # Modification of variable iphysiq depending on the physics |
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[5983] | 281 | ISPALEO=${config_UserChoices_ExpType##*/} |
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| 282 | |
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[6011] | 283 | if [ X${LMDZ_Physics} = X"AP" ] && [ ${ISPALEO} !=Â "paleo" ]; then |
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[2470] | 284 | if [ ${RESOL_ATM_3D} = 96x95x39 ]; then |
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| 285 | value=10 |
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| 286 | elif [ ${RESOL_ATM_3D} = 144x142x39 ]; then |
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| 287 | value=15 |
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| 288 | else |
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| 289 | IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. " |
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| 290 | IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package" |
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| 291 | IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination." |
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| 292 | fi |
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| 293 | elif [ X${LMDZ_Physics} = X"NPv3.1" ] ; then |
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| 294 | if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then |
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| 295 | value=5 |
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| 296 | elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then |
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| 297 | value=5 |
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| 298 | else |
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| 299 | IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. " |
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| 300 | IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package" |
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| 301 | IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination." |
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| 302 | fi |
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| 303 | elif [ X${LMDZ_Physics} = X"NPv3.2" ] ; then |
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| 304 | if [ ${RESOL_ATM_3D} = 96x95x39 ] ; then |
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| 305 | value=5 |
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| 306 | elif [ ${RESOL_ATM_3D} = 144x142x39 ] ; then |
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| 307 | value=5 |
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| 308 | elif [ ${RESOL_ATM_3D} = 128x118x39 ] ; then |
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| 309 | value=15 |
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| 310 | else |
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| 311 | IGCM_debug_Print 1 "LMDZ_Physics=${LMDZ_Physics} has not been tested for the current resolution RESOL_ATM_3D=${RESOL_ATM_3D}. " |
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| 312 | IGCM_debug_Print 1 "iphysiq must be defined for the current combination of resolution and phyiscs package" |
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| 313 | IGCM_debug_Exit "You need to add a special case in lmdz.driver to handle the above combination." |
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| 314 | fi |
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[1690] | 315 | else |
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[2470] | 316 | # Take default value set in gcm.def |
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[2343] | 317 | value=DEFAULT |
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[1544] | 318 | fi |
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[2343] | 319 | IGCM_comp_modifyDefFile nonblocker gcm.def iphysiq $value |
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[2470] | 320 | |
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[396] | 321 | |
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[911] | 322 | ## run.def parameters |
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[2758] | 323 | |
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| 324 | |
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| 325 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 326 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 327 | IGCM_comp_modifyDefFile blocker run.def raz_date 1 |
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| 328 | else |
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| 329 | IGCM_comp_modifyDefFile blocker run.def raz_date 0 |
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| 330 | fi |
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| 331 | |
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| 332 | ##-- Calendar type for LMDZ and create_etat0_limit |
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| 333 | case ${config_UserChoices_CalendarType} in |
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| 334 | leap|gregorian) |
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| 335 | IGCM_comp_modifyDefFile blocker run.def calend gregorian ;; |
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| 336 | noleap) |
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| 337 | IGCM_comp_modifyDefFile blocker run.def calend earth_365d ;; |
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| 338 | 360d) |
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| 339 | IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;; |
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| 340 | *) |
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| 341 | IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;; |
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| 342 | esac |
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| 343 | |
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[2582] | 344 | IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay} |
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| 345 | IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays} |
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[396] | 346 | |
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[1804] | 347 | # Set anneeref different for gcm and ce0l |
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| 348 | # Test if executable create_etat0_limit is present and lmdz.x is not present |
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| 349 | if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
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| 350 | # for case ce0l : always take current year |
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[2343] | 351 | IGCM_comp_modifyDefFile blocker run.def anneeref ${year} |
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[2480] | 352 | |
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| 353 | # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented. |
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| 354 | # In more recent versions of LMDZ, this will not be needed. |
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| 355 | IGCM_comp_modifyDefFile force run.def use_filtre_fft n |
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[1804] | 356 | else |
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| 357 | # for case gcm : take first year of simulation |
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[2343] | 358 | IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear} |
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[1804] | 359 | fi |
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[1643] | 360 | |
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[1650] | 361 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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| 362 | ## and set corresponding parameters in run.def |
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| 363 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
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| 364 | |
---|
| 365 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
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| 366 | echo "Activate ORCHIDEE, set VEGET=y in run.def" |
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[2343] | 367 | IGCM_comp_modifyDefFile blocker run.def VEGET y |
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[1650] | 368 | else |
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| 369 | echo "No ORCHIDEE, set VEGET=n in run.def" |
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[2343] | 370 | IGCM_comp_modifyDefFile blocker run.def VEGET n |
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[1650] | 371 | fi |
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| 372 | |
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| 373 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
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| 374 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
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[2343] | 375 | IGCM_comp_modifyDefFile blocker run.def type_ocean couple |
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[1650] | 376 | else |
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| 377 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
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[2343] | 378 | IGCM_comp_modifyDefFile blocker run.def type_ocean force |
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[1650] | 379 | fi |
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| 380 | |
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| 381 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
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| 382 | echo "Activate coupling to INCA, set type_trac=inca in run.def" |
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[2343] | 383 | IGCM_comp_modifyDefFile blocker run.def type_trac inca |
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[1650] | 384 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
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| 385 | echo "Activate coupling to REPROBUS, set type_trac=repr in run.def" |
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[2343] | 386 | IGCM_comp_modifyDefFile blocker run.def type_trac repr |
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| 387 | IGCM_comp_modifyDefFile blocker run.def config_inca none |
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[1650] | 388 | else |
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| 389 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
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[2343] | 390 | IGCM_comp_modifyDefFile blocker run.def type_trac lmdz |
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| 391 | IGCM_comp_modifyDefFile blocker run.def config_inca none |
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[1650] | 392 | fi |
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| 393 | |
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| 394 | |
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[2015] | 395 | # config.def : Activate direct radiative effect if ok_ade=y |
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| 396 | if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then |
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[2343] | 397 | IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade} |
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[2015] | 398 | else |
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[2343] | 399 | IGCM_comp_modifyDefFile nonblocker config.def ok_ade n |
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[2015] | 400 | fi |
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| 401 | |
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| 402 | # config.def : Activate indirect radiative effect if ok_aie=y |
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| 403 | if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then |
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[2343] | 404 | IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie} |
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[2015] | 405 | else |
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[2343] | 406 | IGCM_comp_modifyDefFile nonblocker config.def ok_aie n |
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[2015] | 407 | fi |
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[1816] | 408 | |
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[2015] | 409 | # config.def : Activate online aerosol coupled model if aerosol_couple=y |
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| 410 | if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then |
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[2343] | 411 | IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple} |
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[1686] | 412 | else |
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[2343] | 413 | IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n |
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[2015] | 414 | fi |
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[1686] | 415 | |
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[2015] | 416 | # config.def : Activate reading of ozone in climatology if read_climoz=2 |
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| 417 | if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then |
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[2343] | 418 | IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz} |
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[2015] | 419 | else |
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[2343] | 420 | IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0 |
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[2015] | 421 | fi |
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| 422 | |
---|
| 423 | # config.def : Choose aerosol use in radiative effect |
---|
| 424 | # type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only |
---|
| 425 | # =5 => dust only =6 => all aerosol |
---|
| 426 | if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then |
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[2343] | 427 | IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol} |
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[2015] | 428 | else |
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[2343] | 429 | IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0 |
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[2015] | 430 | fi |
---|
| 431 | |
---|
| 432 | # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y |
---|
| 433 | if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then |
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[2343] | 434 | IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc} |
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[2015] | 435 | else |
---|
[2343] | 436 | IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n |
---|
[2015] | 437 | fi |
---|
| 438 | |
---|
[2876] | 439 | # config.def : Activate COSP |
---|
| 440 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then |
---|
| 441 | IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK} |
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| 442 | else |
---|
| 443 | IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n |
---|
| 444 | fi |
---|
| 445 | |
---|
[2911] | 446 | # config.def : Modify parameter pmagic if it is set in lmdz.card |
---|
| 447 | if [ ! X${lmdz_UserChoices_pmagic} = X ]; then |
---|
| 448 | IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic} |
---|
| 449 | else |
---|
| 450 | # Take default value set in config.def |
---|
| 451 | IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT |
---|
| 452 | fi |
---|
[2876] | 453 | |
---|
[1690] | 454 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
---|
[1643] | 455 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
---|
[2343] | 456 | IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
---|
[1690] | 457 | else |
---|
[2343] | 458 | IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n |
---|
[1643] | 459 | fi |
---|
| 460 | |
---|
[902] | 461 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
---|
[1172] | 462 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
---|
[1688] | 463 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
---|
[396] | 464 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
---|
| 465 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 466 | echo |
---|
| 467 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
---|
| 468 | echo |
---|
| 469 | cat gcm.def |
---|
| 470 | ByPass_hgardfou_teta=n |
---|
[902] | 471 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
---|
[396] | 472 | fi |
---|
| 473 | |
---|
[902] | 474 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
---|
[1172] | 475 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
---|
[1688] | 476 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
---|
[396] | 477 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
---|
| 478 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 479 | echo |
---|
| 480 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
---|
| 481 | echo |
---|
| 482 | cat gcm.def |
---|
| 483 | ByPass_hgardfou_mats=n |
---|
[902] | 484 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
---|
[396] | 485 | fi |
---|
| 486 | |
---|
[2904] | 487 | # Add include of LMDZ context in iodef.xml |
---|
| 488 | # In iodef.xml add on next line after "COMPONENT CONTEXT" |
---|
| 489 | # <context id="LMDZ" src="./context_lmdz.xml"/> |
---|
| 490 | echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp |
---|
| 491 | cp iodef.xml iodef.xml.tmp |
---|
| 492 | sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml |
---|
| 493 | rm iodef.xml.tmp add.tmp |
---|
[2477] | 494 | |
---|
[2904] | 495 | #Long Name as global attribute (if LongName is not empty) |
---|
| 496 | if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then |
---|
| 497 | listfile=$(ls file_def*lmdz.xml) |
---|
| 498 | echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp |
---|
| 499 | for file in ${listfile} |
---|
| 500 | do |
---|
| 501 | cp ${file} ${file}.tmp |
---|
| 502 | sed -e "/<file id/r add.tmp" \ |
---|
| 503 | ${file}.tmp > ${file} |
---|
| 504 | rm ${file}.tmp |
---|
| 505 | done |
---|
| 506 | rm add.tmp |
---|
[2300] | 507 | fi |
---|
[2904] | 508 | |
---|
[396] | 509 | IGCM_debug_PopStack "ATM_Update" |
---|
| 510 | } |
---|
| 511 | |
---|
| 512 | #----------------------------------- |
---|
| 513 | function ATM_Finalize |
---|
| 514 | { |
---|
| 515 | IGCM_debug_PushStack "ATM_Finalize" |
---|
| 516 | |
---|
[1537] | 517 | # Add special treatement for CARBON CYCLE |
---|
[1546] | 518 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
---|
[1780] | 519 | ATM_Carbon_Finalize |
---|
| 520 | fi |
---|
[1537] | 521 | |
---|
[1780] | 522 | echo FINALIZE ATM ! |
---|
[1537] | 523 | |
---|
[1780] | 524 | IGCM_debug_PopStack "ATM_Finalize" |
---|
| 525 | } |
---|
[1537] | 526 | |
---|
| 527 | |
---|
| 528 | |
---|
[1780] | 529 | function ATM_Carbon_Update |
---|
| 530 | { |
---|
| 531 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
[1537] | 532 | |
---|
[1780] | 533 | IGCM_debug_PushStack "ATM_Carbon_Update" |
---|
| 534 | |
---|
| 535 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
---|
| 536 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 537 | typeset PathCO2log |
---|
| 538 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
---|
| 539 | |
---|
| 540 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
---|
| 541 | ##--Initialization of fluxes to an undefined value at the first run |
---|
| 542 | UndefinedValueCo2=-9999 |
---|
| 543 | InitPeriodCo2=0 |
---|
| 544 | InitDateBeginCo2=${UndefinedValueCo2} |
---|
| 545 | InitYearCo2=$(( ${year} - 1 )) |
---|
| 546 | InitDateEndCo2=${InitYearCo2}1231 |
---|
| 547 | fCO2_ff=${UndefinedValueCo2} |
---|
| 548 | CO2SBG=${UndefinedValueCo2} |
---|
| 549 | CO2LU=${UndefinedValueCo2} |
---|
| 550 | CO2MBG=${UndefinedValueCo2} |
---|
| 551 | CO2_ppm_prec=${UndefinedValueCo2} |
---|
| 552 | # Get the initial value of atmosp. pco2 |
---|
| 553 | CO2_ppm=${lmdz_UserChoices_co2_init} |
---|
| 554 | |
---|
| 555 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 556 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 557 | |
---|
[1537] | 558 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
[1780] | 559 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
[1537] | 560 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
[1780] | 561 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 562 | |
---|
| 563 | # Get the path where the log file co2.log is |
---|
| 564 | PathCO2log=${SUBMIT_DIR} |
---|
| 565 | # Get Previous line in co2.log |
---|
| 566 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 567 | |
---|
| 568 | else |
---|
| 569 | |
---|
| 570 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
---|
| 571 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
---|
| 572 | #SubmitRestartPath= |
---|
| 573 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
---|
| 574 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
---|
| 575 | PathCO2log=${config_ATM_SubmitRestartPath} |
---|
| 576 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
---|
| 577 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
---|
| 578 | |
---|
| 579 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 580 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 581 | |
---|
| 582 | # Save Last Line of control in new co2.log file |
---|
| 583 | InitPeriodCo2=0 |
---|
| 584 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
---|
| 585 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
---|
| 586 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
---|
| 587 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
---|
| 588 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
---|
| 589 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
---|
| 590 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
---|
| 591 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 592 | |
---|
| 593 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 594 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 595 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 596 | else |
---|
| 597 | # Get restart line in co2.log |
---|
| 598 | PathCO2log=${SUBMIT_DIR} |
---|
| 599 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 600 | # Get the value of atmosp. pco2 in co2.log |
---|
| 601 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 602 | fi |
---|
| 603 | |
---|
[1537] | 604 | fi |
---|
[1780] | 605 | |
---|
| 606 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
---|
[2841] | 607 | # Modify co2_ppm in config.def only for historical run |
---|
| 608 | # If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile |
---|
| 609 | IGCM_comp_modifyDefFile force config.def co2_ppm ${CO2_ppm} |
---|
[1780] | 610 | fi |
---|
| 611 | IGCM_debug_PopStack "ATM_Carbon_Update" |
---|
| 612 | } |
---|
[1537] | 613 | |
---|
[396] | 614 | |
---|
[1780] | 615 | function ATM_Carbon_Finalize |
---|
| 616 | { |
---|
| 617 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
| 618 | |
---|
| 619 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
---|
| 620 | |
---|
| 621 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 622 | |
---|
| 623 | # Fossil fuel emission |
---|
| 624 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
---|
| 625 | # For Control, no fossil fuel emission : |
---|
| 626 | fCO2_ff=0 |
---|
| 627 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
---|
| 628 | else |
---|
| 629 | # For historical, get the fossile fuel file : |
---|
| 630 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
---|
| 631 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
---|
| 632 | fi |
---|
| 633 | |
---|
| 634 | # Get the value of ocean carbon flux |
---|
| 635 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
---|
| 636 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
---|
| 637 | echo "Ocean carbon flux :" ${CO2MBG} |
---|
| 638 | |
---|
| 639 | # Get the value of land fluxes |
---|
| 640 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
---|
| 641 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
---|
| 642 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
---|
| 643 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
---|
| 644 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
| 645 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
| 646 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
---|
| 647 | |
---|
| 648 | # Previous CO2 |
---|
| 649 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 650 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
| 651 | |
---|
| 652 | # Formula |
---|
| 653 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
| 654 | echo "New CO2 :" ${CO2_ppm} |
---|
| 655 | |
---|
| 656 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 657 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 658 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 659 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 660 | |
---|
| 661 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
[396] | 662 | } |
---|