[396] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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[894] | 3 | function LMDZ_sed |
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| 4 | { |
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[1690] | 5 | # Usage : LMDZ_sed filedef var_name myvalue |
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| 6 | # In file filedef modify the line containing var_name=xxx into var_name=myvalue |
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[894] | 7 | IGCM_debug_PushStack "LMDZ_sed" |
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[1783] | 8 | |
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| 9 | # Test if the fichier exist |
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| 10 | if [ ! -f ${1} ] ; then |
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| 11 | echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}" |
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| 12 | return |
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| 13 | fi |
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[894] | 14 | |
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[911] | 15 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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[894] | 16 | RET=$? |
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| 17 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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| 18 | \mv ${1}.tmp ${1} |
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| 19 | |
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| 20 | IGCM_debug_PopStack "LMDZ_sed" |
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| 21 | return $RET |
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| 22 | } |
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[1690] | 23 | function LMDZ_sed_default |
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| 24 | { |
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| 25 | # Usage : LMDZ_sed_default filedef var_name |
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| 26 | # In file filedef modify the line "var_name=xxx DEFAULT= myvalue" |
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| 27 | # into "var_name=myvalue" |
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| 28 | IGCM_debug_PushStack "LMDZ_sed_default" |
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[894] | 29 | |
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[1690] | 30 | DefValue=$( grep ${2} ${1} | awk -F"DEFAULT.=*" '{print $2}') |
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| 31 | |
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| 32 | LMDZ_sed ${1} ${2} $DefValue |
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| 33 | IGCM_debug_PopStack "LMDZ_sed_default" |
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| 34 | return $RET |
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| 35 | } |
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| 36 | |
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| 37 | |
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[396] | 38 | function ATM_Initialize |
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| 39 | { |
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| 40 | IGCM_debug_PushStack "ATM_Initialize" |
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| 41 | |
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[671] | 42 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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[396] | 43 | |
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[659] | 44 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19 |
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[396] | 45 | |
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[659] | 46 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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[649] | 47 | |
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[697] | 48 | ##-- Calendar type for LMDZ |
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| 49 | case ${config_UserChoices_CalendarType} in |
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| 50 | leap|gregorian) |
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| 51 | CalendarTypeForLmdz=earth_366d;; |
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| 52 | noleap) |
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| 53 | CalendarTypeForLmdz=earth_365d;; |
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| 54 | 360d) |
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| 55 | CalendarTypeForLmdz=earth_360d;; |
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| 56 | *) |
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| 57 | CalendarTypeForLmdz=earth_360d |
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| 58 | esac |
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| 59 | |
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[1541] | 60 | ##- LMDZ physics version |
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| 61 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 62 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 63 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 64 | else |
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| 65 | LMDZ_Physics=AP |
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| 66 | fi |
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| 67 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 68 | |
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[1643] | 69 | ##- Create_etat0_limit version |
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[1782] | 70 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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| 71 | ## This variable is only used in lmdz.card to choose input files. |
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| 72 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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| 73 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 74 | CREATE=${lmdz_UserChoices_CREATE} |
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| 75 | echo create_etat0_limit version : ${CREATE} |
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| 76 | fi |
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[1643] | 77 | |
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[1782] | 78 | |
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[1550] | 79 | ## - LMDZ choice of config.def file |
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| 80 | ## ConfType must be set in lmdz.card |
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| 81 | ConfType=${lmdz_UserChoices_ConfType} |
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[1541] | 82 | |
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[1550] | 83 | ##- LMDZ output level, to be set in lmdz.card |
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| 84 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 85 | # OutLevel is not set. Take default value low. |
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| 86 | OutLevel=low |
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| 87 | else |
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| 88 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 89 | fi |
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| 90 | |
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[1539] | 91 | ##-- Output frequency purpose .... |
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[396] | 92 | ##-- Initialisation .... |
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[1539] | 93 | ok_mensuel=n |
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| 94 | ok_journe=n |
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[396] | 95 | ok_hf=n |
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[1539] | 96 | ok_hf3h=n |
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| 97 | ok_hf3hm=n |
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| 98 | ok_stn=n |
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[396] | 99 | |
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| 100 | case ${config_UserChoices_PeriodLength} in |
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[1539] | 101 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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| 102 | 5D|5d|1D|1d) ok_journe=y ;; |
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[396] | 103 | esac |
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| 104 | |
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| 105 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 106 | case ${frequency} in |
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[1539] | 107 | 1M|1m) ok_mensuel=y ;; |
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[396] | 108 | esac |
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| 109 | case ${frequency} in |
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[1539] | 110 | 5D|5d|1D|1d) ok_journe=y ;; |
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| 111 | esac |
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| 112 | case ${frequency} in |
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[396] | 113 | HF|hf) ok_hf=y ;; |
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| 114 | esac |
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[1539] | 115 | case ${frequency} in |
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| 116 | HF3h|hf3h) ok_hf3h=y ;; |
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| 117 | esac |
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| 118 | case ${frequency} in |
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| 119 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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| 120 | esac |
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| 121 | case ${frequency} in |
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| 122 | STN|stn) ok_stn=y ;; |
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| 123 | esac |
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[396] | 124 | done |
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| 125 | |
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[902] | 126 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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[1688] | 127 | if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then |
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| 128 | # The variable is not in lmdz.card, set default value |
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| 129 | LMDZ_NbPeriod_adjust=0 |
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| 130 | else |
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| 131 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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| 132 | fi |
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[396] | 133 | |
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[815] | 134 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1688] | 135 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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[815] | 136 | fi |
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| 137 | |
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[912] | 138 | |
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[1783] | 139 | ## Read LMDZ_COSP_OK in lmdz.card |
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| 140 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then |
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| 141 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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| 142 | else |
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| 143 | LMDZ_COSP_OK=n |
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| 144 | fi |
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| 145 | ## Read LMDZ_COSP_monthly in lmdz.card |
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| 146 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then |
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| 147 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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| 148 | else |
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| 149 | LMDZ_COSP_monthly=n |
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| 150 | fi |
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| 151 | ## Read LMDZ_COSP_daily in lmdz.card |
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| 152 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then |
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| 153 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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| 154 | else |
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| 155 | LMDZ_COSP_daily=n |
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| 156 | fi |
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| 157 | ## Read LMDZ_COSP_hf in lmdz.card |
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| 158 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then |
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| 159 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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| 160 | else |
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| 161 | LMDZ_COSP_hf=n |
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| 162 | fi |
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[1000] | 163 | |
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[1783] | 164 | ## Read LMDZ_NMC_monthly in lmdz.card |
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| 165 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then |
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| 166 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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| 167 | else |
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| 168 | LMDZ_NMC_monthly=n |
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| 169 | fi |
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[1000] | 170 | |
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[1783] | 171 | ## Read LMDZ_NMC_daily in lmdz.card |
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| 172 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then |
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| 173 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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| 174 | else |
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| 175 | LMDZ_NMC_daily=n |
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| 176 | fi |
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| 177 | |
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| 178 | ## Read LMDZ_NMC_hf in lmdz.card |
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| 179 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then |
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| 180 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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| 181 | else |
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| 182 | LMDZ_NMC_hf=n |
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| 183 | fi |
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| 184 | |
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| 185 | |
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[396] | 186 | IGCM_debug_PopStack "ATM_Initialize" |
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| 187 | } |
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| 188 | |
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| 189 | #----------------------------------------------------------------- |
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| 190 | function ATM_Update |
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| 191 | { |
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| 192 | IGCM_debug_PushStack "ATM_Update" |
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| 193 | |
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[1537] | 194 | |
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[749] | 195 | case ${config_UserChoices_PeriodLength} in |
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| 196 | *Y|*y) |
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| 197 | LMDZ_ecrit_ISCCP=30. |
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| 198 | LMDZ_periodav=30. |
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[755] | 199 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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[1649] | 200 | echo Do not consider following warning if your running create_etat0_limit : |
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[1650] | 201 | echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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[1649] | 202 | fi |
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[749] | 203 | ;; |
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| 204 | *) |
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| 205 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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| 206 | LMDZ_periodav=${PeriodLengthInDays}. |
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| 207 | ;; |
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| 208 | esac |
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[1546] | 209 | |
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[396] | 210 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 211 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 212 | RAZ_DATE=1 |
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| 213 | else |
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| 214 | RAZ_DATE=0 |
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| 215 | fi |
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| 216 | |
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[815] | 217 | ## algo : For CumulPeriod=1 ; |
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| 218 | ## IF NbPeriod_Adjust = 0, Get Bands file directly from server, store it with _0 suffix |
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| 219 | ## ELSE LMDZ_adjust=y ; save Bands file on file server ; |
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| 220 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; Get Bands file from server (CumulPeriod-1) ; LMDZ_adjust=y ; save Bands file on file server ; |
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| 221 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from server (CumulPeriod=LMDZ_NbPeriod_adjust 0 to force it) ; Use Bands ; |
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| 222 | |
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| 223 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 224 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1778] | 225 | if [ ! X${LMDZ_Bands_file_name} = X ] ; then |
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[1688] | 226 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 227 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
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| 228 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 229 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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| 230 | fi |
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[815] | 231 | fi |
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| 232 | fi |
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| 233 | |
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[743] | 234 | LMDZ_adjust=n |
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| 235 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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| 236 | |
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[815] | 237 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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| 238 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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[743] | 239 | |
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[902] | 240 | [ ${CumulPeriod} -gt 1 ] && ( IGCM_sys_Get ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ; IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ) |
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[743] | 241 | |
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[1535] | 242 | ##-- GHG forcing : |
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[1546] | 243 | ## If forcing file exist in run directory, read values for the current year and modify config.def |
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[1535] | 244 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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| 245 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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[1546] | 246 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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[1690] | 247 | else |
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| 248 | LMDZ_sed_default config.def solaire |
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[1535] | 249 | fi |
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| 250 | if [ -f CO2.txt ] ; then |
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| 251 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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[1546] | 252 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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[1690] | 253 | else |
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| 254 | LMDZ_sed_default config.def co2_ppm |
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[1535] | 255 | fi |
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[1690] | 256 | |
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| 257 | |
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[1535] | 258 | if [ -f CH4.txt ] ; then |
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| 259 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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[1546] | 260 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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[1690] | 261 | else |
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| 262 | LMDZ_sed_default config.def CH4_ppb |
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[1535] | 263 | fi |
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| 264 | if [ -f N2O.txt ] ; then |
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| 265 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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[1546] | 266 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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[1690] | 267 | else |
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| 268 | LMDZ_sed_default config.def N2O_ppb |
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[1535] | 269 | fi |
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| 270 | if [ -f CFC11.txt ] ; then |
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| 271 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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[1546] | 272 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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[1690] | 273 | else |
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| 274 | LMDZ_sed_default config.def CFC11_ppt |
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[1535] | 275 | fi |
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| 276 | if [ -f CFC12.txt ] ; then |
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| 277 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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[1546] | 278 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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[1690] | 279 | else |
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| 280 | LMDZ_sed_default config.def CFC12_ppt |
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[1535] | 281 | fi |
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| 282 | |
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[1780] | 283 | |
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| 284 | ##-- Add special treatement for CARBON CYCLE |
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[1546] | 285 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1780] | 286 | ATM_Carbon_Update |
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| 287 | fi |
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[1537] | 288 | |
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| 289 | |
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[1538] | 290 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 291 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 292 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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| 293 | LMDZ_COSP_daily=y |
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| 294 | fi |
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[1537] | 295 | |
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[1538] | 296 | |
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[1540] | 297 | ## output.def parameters |
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[1546] | 298 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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[1539] | 299 | # histmth histday histhf histfh3h histhf3hm histstn |
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[1546] | 300 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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[1540] | 301 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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| 302 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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| 303 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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| 304 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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| 305 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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[1783] | 306 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}" |
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[396] | 307 | |
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[1544] | 308 | ## gcm.def parameters : |
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| 309 | # Modification only for new physics |
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[1750] | 310 | if [ X${LMDZ_Physics} = X"NPv3.1" ] ; then |
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[1544] | 311 | LMDZ_sed gcm.def iphysiq 5 |
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[1690] | 312 | else |
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| 313 | LMDZ_sed_default gcm.def iphysiq |
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[1544] | 314 | fi |
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[396] | 315 | |
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[1544] | 316 | |
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[911] | 317 | ## run.def parameters |
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| 318 | LMDZ_sed run.def dayref ${InitDay} |
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| 319 | LMDZ_sed run.def anneeref ${InitYear} |
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| 320 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
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| 321 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
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| 322 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
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| 323 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
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| 324 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
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[396] | 325 | |
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[1643] | 326 | |
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[1650] | 327 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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| 328 | ## and set corresponding parameters in run.def |
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| 329 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
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| 330 | |
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| 331 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
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| 332 | echo "Activate ORCHIDEE, set VEGET=y in run.def" |
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| 333 | LMDZ_sed run.def VEGET y |
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| 334 | else |
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| 335 | echo "No ORCHIDEE, set VEGET=n in run.def" |
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| 336 | LMDZ_sed run.def VEGET n |
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| 337 | fi |
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| 338 | |
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| 339 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
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| 340 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
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| 341 | LMDZ_sed run.def type_ocean couple |
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| 342 | else |
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| 343 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
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| 344 | LMDZ_sed run.def type_ocean force |
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| 345 | fi |
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| 346 | |
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| 347 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
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| 348 | echo "Activate coupling to INCA, set type_trac=inca in run.def" |
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[1667] | 349 | LMDZ_sed run.def type_trac inca |
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[1650] | 350 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
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| 351 | echo "Activate coupling to REPROBUS, set type_trac=repr in run.def" |
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[1667] | 352 | LMDZ_sed run.def type_trac repr |
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[1779] | 353 | LMDZ_sed run.def config_inca none |
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[1650] | 354 | else |
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| 355 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
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[1667] | 356 | LMDZ_sed run.def type_trac lmdz |
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[1779] | 357 | LMDZ_sed run.def config_inca none |
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[1650] | 358 | fi |
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| 359 | |
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| 360 | |
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[1670] | 361 | # config.def : If running with Reprobus, desactivate ok_ade, ok_aie and read_climoz |
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[1698] | 362 | if [ X${config_ListOfComponents_CHM} = Xreprobus ] || [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
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[1670] | 363 | LMDZ_sed config.def ok_ade n |
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| 364 | LMDZ_sed config.def ok_aie n |
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| 365 | LMDZ_sed config.def read_climoz 0 |
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| 366 | else |
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| 367 | LMDZ_sed config.def ok_ade y |
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| 368 | LMDZ_sed config.def ok_aie y |
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| 369 | LMDZ_sed config.def read_climoz 2 |
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| 370 | fi |
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| 371 | |
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[1690] | 372 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
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[1643] | 373 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
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| 374 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
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[1690] | 375 | else |
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| 376 | LMDZ_sed guide.def ok_guide n |
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[1643] | 377 | fi |
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| 378 | |
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[902] | 379 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
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[1172] | 380 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
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[1688] | 381 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
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[396] | 382 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
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| 383 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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| 384 | echo |
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| 385 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
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| 386 | echo |
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| 387 | cat gcm.def |
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| 388 | ByPass_hgardfou_teta=n |
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[902] | 389 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
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[396] | 390 | fi |
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| 391 | |
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[902] | 392 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
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[1172] | 393 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
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[1688] | 394 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
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[396] | 395 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
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| 396 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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| 397 | echo |
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| 398 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
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| 399 | echo |
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| 400 | cat gcm.def |
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| 401 | ByPass_hgardfou_mats=n |
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[902] | 402 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
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[396] | 403 | fi |
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| 404 | |
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| 405 | if ( ${FirstInitialize} ) ; then |
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[1643] | 406 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
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| 407 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
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| 408 | echo "Restart files for LMDZ have been copied from a previous run" |
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[1778] | 409 | elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
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[1649] | 410 | # Do nothing because it is the program for creating restart files that is running and not LMDZ |
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| 411 | echo "create_etat0_limit.e will create initial start files" |
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[1643] | 412 | else |
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| 413 | # Restart files have to be created |
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| 414 | echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
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[396] | 415 | if [ ${DRYRUN} -le 2 ] ; then |
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[894] | 416 | ##-- suppression of ozone file construction -- |
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[1643] | 417 | cp config.def config.def.save |
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| 418 | LMDZ_sed config.def read_climoz 0 |
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[396] | 419 | IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/. |
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| 420 | if [ ${DRYRUN} -le 1 ] ; then |
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[908] | 421 | ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e |
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[1643] | 422 | IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc |
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| 423 | IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc |
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[396] | 424 | fi |
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[1643] | 425 | IGCM_sys_Mv config.def.save config.def |
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[396] | 426 | else |
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[908] | 427 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated" |
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| 428 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack |
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[396] | 429 | fi |
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| 430 | fi |
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| 431 | fi |
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| 432 | |
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| 433 | IGCM_debug_PopStack "ATM_Update" |
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| 434 | } |
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| 435 | |
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| 436 | #----------------------------------- |
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| 437 | function ATM_Finalize |
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| 438 | { |
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| 439 | IGCM_debug_PushStack "ATM_Finalize" |
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| 440 | |
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[743] | 441 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
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[396] | 442 | |
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[1537] | 443 | |
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| 444 | # Add special treatement for CARBON CYCLE |
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[1546] | 445 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1780] | 446 | ATM_Carbon_Finalize |
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| 447 | fi |
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[1537] | 448 | |
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[1780] | 449 | echo FINALIZE ATM ! |
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[1537] | 450 | |
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[1780] | 451 | IGCM_debug_PopStack "ATM_Finalize" |
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| 452 | } |
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[1537] | 453 | |
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| 454 | |
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| 455 | |
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[1780] | 456 | function ATM_Carbon_Update |
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| 457 | { |
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| 458 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
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[1537] | 459 | |
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[1780] | 460 | IGCM_debug_PushStack "ATM_Carbon_Update" |
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| 461 | |
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| 462 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
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| 463 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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| 464 | typeset PathCO2log |
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| 465 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
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| 466 | |
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| 467 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
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| 468 | ##--Initialization of fluxes to an undefined value at the first run |
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| 469 | UndefinedValueCo2=-9999 |
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| 470 | InitPeriodCo2=0 |
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| 471 | InitDateBeginCo2=${UndefinedValueCo2} |
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| 472 | InitYearCo2=$(( ${year} - 1 )) |
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| 473 | InitDateEndCo2=${InitYearCo2}1231 |
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| 474 | fCO2_ff=${UndefinedValueCo2} |
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| 475 | CO2SBG=${UndefinedValueCo2} |
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| 476 | CO2LU=${UndefinedValueCo2} |
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| 477 | CO2MBG=${UndefinedValueCo2} |
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| 478 | CO2_ppm_prec=${UndefinedValueCo2} |
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| 479 | # Get the initial value of atmosp. pco2 |
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| 480 | CO2_ppm=${lmdz_UserChoices_co2_init} |
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| 481 | |
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| 482 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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| 483 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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| 484 | |
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[1537] | 485 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
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[1780] | 486 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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[1537] | 487 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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[1780] | 488 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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| 489 | |
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| 490 | # Get the path where the log file co2.log is |
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| 491 | PathCO2log=${SUBMIT_DIR} |
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| 492 | # Get Previous line in co2.log |
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| 493 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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| 494 | |
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| 495 | else |
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| 496 | |
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| 497 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
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| 498 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
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| 499 | #SubmitRestartPath= |
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| 500 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
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| 501 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
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| 502 | PathCO2log=${config_ATM_SubmitRestartPath} |
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| 503 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
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| 504 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
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| 505 | |
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| 506 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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| 507 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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| 508 | |
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| 509 | # Save Last Line of control in new co2.log file |
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| 510 | InitPeriodCo2=0 |
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| 511 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
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| 512 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
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| 513 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
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| 514 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
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| 515 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
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| 516 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
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| 517 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
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| 518 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 519 | |
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| 520 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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| 521 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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| 522 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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| 523 | else |
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| 524 | # Get restart line in co2.log |
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| 525 | PathCO2log=${SUBMIT_DIR} |
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| 526 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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| 527 | # Get the value of atmosp. pco2 in co2.log |
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| 528 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 529 | fi |
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| 530 | |
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[1537] | 531 | fi |
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[1780] | 532 | |
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| 533 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
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| 534 | # Modify co2_ppm in config.def only for historical run |
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| 535 | # If not historical run, keep co2_ppm value set earlier by LMDZ_sed |
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| 536 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
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| 537 | fi |
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| 538 | IGCM_debug_PopStack "ATM_Carbon_Update" |
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| 539 | } |
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[1537] | 540 | |
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[396] | 541 | |
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[1780] | 542 | function ATM_Carbon_Finalize |
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| 543 | { |
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| 544 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
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| 545 | |
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| 546 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
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| 547 | |
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| 548 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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| 549 | |
---|
| 550 | # Fossil fuel emission |
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| 551 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
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| 552 | # For Control, no fossil fuel emission : |
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| 553 | fCO2_ff=0 |
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| 554 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
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| 555 | else |
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| 556 | # For historical, get the fossile fuel file : |
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| 557 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
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| 558 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
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| 559 | fi |
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| 560 | |
---|
| 561 | # Get the value of ocean carbon flux |
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| 562 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
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| 563 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
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| 564 | echo "Ocean carbon flux :" ${CO2MBG} |
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| 565 | |
---|
| 566 | # Get the value of land fluxes |
---|
| 567 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
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| 568 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
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| 569 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
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| 570 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
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| 571 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
| 572 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
| 573 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
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| 574 | |
---|
| 575 | # Previous CO2 |
---|
| 576 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 577 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
| 578 | |
---|
| 579 | # Formula |
---|
| 580 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
| 581 | echo "New CO2 :" ${CO2_ppm} |
---|
| 582 | |
---|
| 583 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 584 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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| 585 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 586 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 587 | |
---|
| 588 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
[396] | 589 | } |
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