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source: CONFIG/UNIFORM/v5/LMDZOR_v5/GENERAL/DRIVER/lmdz.driver @ 1780

Last change on this file since 1780 was 1780, checked in by jgipsl, 12 years ago
Moved specific treatement for carbon cycle to seperate functions: ATM_Carbon_Update and ATM_Carbon_Finalize. These functions will only be called if CARBON_CYCLE=control or CARBON_CYCLE=historical is set in lmdz.card.
File size: 20.8 KB

Rev	Line
[396]	1	#!/bin/ksh
	2	#-----------------------------------------------------------------
[894]	3	function LMDZ_sed
	4	{
[1690]	5	# Usage : LMDZ_sed filedef var_name myvalue
	6	# In file filedef modify the line containing var_name=xxx into var_name=myvalue
[894]	7	IGCM_debug_PushStack "LMDZ_sed"
	8
[911]	9	sed -e "s/^${2}\ =./${2}= ${3}/" ${1} > ${1}.tmp
[894]	10	RET=$?
	11	echo "LMDZ_sed : ${1} ${2} ${3}"
	12	\mv ${1}.tmp ${1}
	13
	14	IGCM_debug_PopStack "LMDZ_sed"
	15	return $RET
	16	}
[1690]	17	function LMDZ_sed_default
	18	{
	19	# Usage : LMDZ_sed_default filedef var_name
	20	# In file filedef modify the line "var_name=xxx DEFAULT= myvalue"
	21	# into "var_name=myvalue"
	22	IGCM_debug_PushStack "LMDZ_sed_default"
[894]	23
[1690]	24	DefValue=$( grep ${2} ${1} \| awk -F"DEFAULT.=*" '{print $2}')
	25
	26	LMDZ_sed ${1} ${2} $DefValue
	27	IGCM_debug_PopStack "LMDZ_sed_default"
	28	return $RET
	29	}
	30
	31
[396]	32	function ATM_Initialize
	33	{
	34	IGCM_debug_PushStack "ATM_Initialize"
	35
[671]	36	RESOL_ATM=$( echo $RESOL \| awk "-Fx" '{print $2}' \| awk "-F-" '{print $1}')
[396]	37
[659]	38	[ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) \|\| RESOL_ATM_3D=96x95x19
[396]	39
[659]	40	RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $3}' )
[649]	41
[697]	42	##-- Calendar type for LMDZ
	43	case ${config_UserChoices_CalendarType} in
	44	leap\|gregorian)
	45	CalendarTypeForLmdz=earth_366d;;
	46	noleap)
	47	CalendarTypeForLmdz=earth_365d;;
	48	360d)
	49	CalendarTypeForLmdz=earth_360d;;
	50	*)
	51	CalendarTypeForLmdz=earth_360d
	52	esac
	53
[1541]	54	##- LMDZ physics version
	55	## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
	56	if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
	57	LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
	58	else
	59	LMDZ_Physics=AP
	60	fi
	61	echo LMDZ physics version : ${LMDZ_Physics}
	62
[1643]	63	##- Create_etat0_limit version
[1689]	64	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
[1643]	65	CREATE=${lmdz_UserChoices_CREATE}
	66	echo create_etat0_limit version : ${CREATE}
	67
[1550]	68	## - LMDZ choice of config.def file
	69	## ConfType must be set in lmdz.card
	70	ConfType=${lmdz_UserChoices_ConfType}
[1541]	71
[1550]	72	##- LMDZ output level, to be set in lmdz.card
	73	if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
	74	# OutLevel is not set. Take default value low.
	75	OutLevel=low
	76	else
	77	OutLevel=${lmdz_UserChoices_OutLevel}
	78	fi
	79
[1539]	80	##-- Output frequency purpose ....
[396]	81	##-- Initialisation ....
[1539]	82	ok_mensuel=n
	83	ok_journe=n
[396]	84	ok_hf=n
[1539]	85	ok_hf3h=n
	86	ok_hf3hm=n
	87	ok_stn=n
[396]	88
	89	case ${config_UserChoices_PeriodLength} in
[1539]	90	1Y\|1y\|1M\|1m) ok_mensuel=y ;;
	91	5D\|5d\|1D\|1d) ok_journe=y ;;
[396]	92	esac
	93
	94	for frequency in ${config_ATM_WriteFrequency} ; do
	95	case ${frequency} in
[1539]	96	1M\|1m) ok_mensuel=y ;;
[396]	97	esac
	98	case ${frequency} in
[1539]	99	5D\|5d\|1D\|1d) ok_journe=y ;;
	100	esac
	101	case ${frequency} in
[396]	102	HF\|hf) ok_hf=y ;;
	103	esac
[1539]	104	case ${frequency} in
	105	HF3h\|hf3h) ok_hf3h=y ;;
	106	esac
	107	case ${frequency} in
	108	HF3hm\|hf3hm) ok_hf3hm=y ;;
	109	esac
	110	case ${frequency} in
	111	STN\|stn) ok_stn=y ;;
	112	esac
[396]	113	done
	114
[902]	115	## Read LMDZ_NbPeriod_adjust option in lmdz.card
[1688]	116	if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then
	117	# The variable is not in lmdz.card, set default value
	118	LMDZ_NbPeriod_adjust=0
	119	else
	120	LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
	121	fi
[396]	122
[815]	123	if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
[1688]	124	LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
[815]	125	fi
	126
[912]	127	## Read LMDZ_Freq_aero and LMDZ_Length_aero in lmdz.card
[1172]	128	LMDZ_Freq_aero=${lmdz_UserChoices_LMDZ_Freq_aero}
	129	LMDZ_Length_aero=${lmdz_UserChoices_LMDZ_Length_aero}
[912]	130
[1000]	131	## Read LMDZ_COSP_monthly LMDZ_COSP_daily and LMDZ_COSP_hf in lmdz.card
[1172]	132	LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
	133	LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
	134	LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
	135	LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
[1000]	136
[1003]	137	## Read LMDZ_NMC_monthly LMDZ_NMC_daily and LMDZ_NMC_hf in lmdz.card
[1172]	138	LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
	139	LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
	140	LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
[1000]	141
[396]	142	IGCM_debug_PopStack "ATM_Initialize"
	143	}
	144
	145	#-----------------------------------------------------------------
	146	function ATM_Update
	147	{
	148	IGCM_debug_PushStack "ATM_Update"
	149
[1537]	150
[749]	151	case ${config_UserChoices_PeriodLength} in
	152	Y\|y)
	153	LMDZ_ecrit_ISCCP=30.
	154	LMDZ_periodav=30.
[755]	155	if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
[1649]	156	echo Do not consider following warning if your running create_etat0_limit :
[1650]	157	echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d
[1649]	158	fi
[749]	159	;;
	160	*)
	161	LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
	162	LMDZ_periodav=${PeriodLengthInDays}.
	163	;;
	164	esac
[1546]	165
[396]	166	##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
	167	if [ ${CumulPeriod} -eq 1 ] ; then
	168	RAZ_DATE=1
	169	else
	170	RAZ_DATE=0
	171	fi
	172
[815]	173	## algo : For CumulPeriod=1 ;
	174	## IF NbPeriod_Adjust = 0, Get Bands file directly from server, store it with _0 suffix
	175	## ELSE LMDZ_adjust=y ; save Bands file on file server ;
	176	## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; Get Bands file from server (CumulPeriod-1) ; LMDZ_adjust=y ; save Bands file on file server ;
	177	## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from server (CumulPeriod=LMDZ_NbPeriod_adjust 0 to force it) ; Use Bands ;
	178
	179	if [ ${CumulPeriod} -eq 1 ] ; then
	180	if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
[1778]	181	if [ ! X${LMDZ_Bands_file_name} = X ] ; then
[1688]	182	IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
	183	IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
	184	IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
	185	IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
	186	fi
[815]	187	fi
	188	fi
	189
[743]	190	LMDZ_adjust=n
	191	[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
	192
[815]	193	RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
	194	[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 ))
[743]	195
[902]	196	[ ${CumulPeriod} -gt 1 ] && ( IGCM_sys_Get ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ; IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat )
[743]	197
[1535]	198	##-- GHG forcing :
[1546]	199	## If forcing file exist in run directory, read values for the current year and modify config.def
[1535]	200	if [ -f SOLARANDVOLCANOES.txt ] ; then
	201	IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt \| awk -F= '{print $2}'`
[1546]	202	LMDZ_sed config.def solaire ${IPCC_SOLAR}
[1690]	203	else
	204	LMDZ_sed_default config.def solaire
[1535]	205	fi
	206	if [ -f CO2.txt ] ; then
	207	IPCC_CO2=`grep Annee_${year} CO2.txt \| awk -F= '{print $2}'`
[1546]	208	LMDZ_sed config.def co2_ppm ${IPCC_CO2}
[1690]	209	else
	210	LMDZ_sed_default config.def co2_ppm
[1535]	211	fi
[1690]	212
	213
[1535]	214	if [ -f CH4.txt ] ; then
	215	IPCC_CH4=`grep Annee_${year} CH4.txt \| awk -F= '{print $2}'`
[1546]	216	LMDZ_sed config.def CH4_ppb ${IPCC_CH4}
[1690]	217	else
	218	LMDZ_sed_default config.def CH4_ppb
[1535]	219	fi
	220	if [ -f N2O.txt ] ; then
	221	IPCC_N2O=`grep Annee_${year} N2O.txt \| awk -F= '{print $2}'`
[1546]	222	LMDZ_sed config.def N2O_ppb ${IPCC_N2O}
[1690]	223	else
	224	LMDZ_sed_default config.def N2O_ppb
[1535]	225	fi
	226	if [ -f CFC11.txt ] ; then
	227	IPCC_CFC11=`grep Annee_${year} CFC11.txt \| awk -F= '{print $2}'`
[1546]	228	LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11}
[1690]	229	else
	230	LMDZ_sed_default config.def CFC11_ppt
[1535]	231	fi
	232	if [ -f CFC12.txt ] ; then
	233	IPCC_CFC12=`grep Annee_${year} CFC12.txt \| awk -F= '{print $2}'`
[1546]	234	LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12}
[1690]	235	else
	236	LMDZ_sed_default config.def CFC12_ppt
[1535]	237	fi
	238
[1780]	239
	240	##-- Add special treatement for CARBON CYCLE
[1546]	241	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
[1780]	242	ATM_Carbon_Update
	243	fi
[1537]	244
	245
[1538]	246	##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
	247	## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
	248	if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then
	249	LMDZ_COSP_daily=y
	250	fi
[1537]	251
[1538]	252
[1540]	253	## output.def parameters
[1546]	254	# columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def :
[1539]	255	# histmth histday histhf histfh3h histhf3hm histstn
[1546]	256	LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}"
[1540]	257	LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP}
	258	LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK}
	259	LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly}
	260	LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily}
	261	LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf}
	262	LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly}, ${LMDZ_NMC_daily}, ${LMDZ_NMC_hf}"
[396]	263
[1544]	264	## gcm.def parameters :
	265	# Modification only for new physics
[1750]	266	if [ X${LMDZ_Physics} = X"NPv3.1" ] ; then
[1544]	267	LMDZ_sed gcm.def iphysiq 5
[1690]	268	else
	269	LMDZ_sed_default gcm.def iphysiq
[1544]	270	fi
[396]	271
[1544]	272
[911]	273	## run.def parameters
	274	LMDZ_sed run.def dayref ${InitDay}
	275	LMDZ_sed run.def anneeref ${InitYear}
	276	LMDZ_sed run.def calend ${CalendarTypeForLmdz}
	277	LMDZ_sed run.def nday ${PeriodLengthInDays}
	278	LMDZ_sed run.def raz_date ${RAZ_DATE}
	279	LMDZ_sed run.def periodav ${LMDZ_periodav}
	280	LMDZ_sed run.def adjust ${LMDZ_adjust}
[396]	281
[1643]	282
[1650]	283	## Determine from the variable ListOfComponents in config.card coupling to external models
	284	## and set corresponding parameters in run.def
	285	echo ListOfComponents now running : ${config_ListOfComponents[*]}
	286
	287	if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
	288	echo "Activate ORCHIDEE, set VEGET=y in run.def"
	289	LMDZ_sed run.def VEGET y
	290	else
	291	echo "No ORCHIDEE, set VEGET=n in run.def"
	292	LMDZ_sed run.def VEGET n
	293	fi
	294
	295	if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
	296	echo "Activate coupling to ocean, set type_ocean=couple in run.def"
	297	LMDZ_sed run.def type_ocean couple
	298	else
	299	echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
	300	LMDZ_sed run.def type_ocean force
	301	fi
	302
	303	if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
	304	echo "Activate coupling to INCA, set type_trac=inca in run.def"
[1666]	305	LMDZ_sed run.def type_trac inca
[1650]	306	elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
	307	echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
[1666]	308	LMDZ_sed run.def type_trac repr
[1779]	309	LMDZ_sed run.def config_inca none
[1650]	310	else
	311	echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
[1666]	312	LMDZ_sed run.def type_trac lmdz
[1779]	313	LMDZ_sed run.def config_inca none
[1650]	314	fi
	315
	316
[1686]	317	# config.def : If running with Reprobus, desactivate ok_ade, ok_aie and read_climoz
[1698]	318	if [ X${config_ListOfComponents_CHM} = Xreprobus ] \|\| [ X${config_ListOfComponents_CHM} = Xinca ] ; then
[1686]	319	LMDZ_sed config.def ok_ade n
	320	LMDZ_sed config.def ok_aie n
	321	LMDZ_sed config.def read_climoz 0
	322	else
	323	LMDZ_sed config.def ok_ade y
	324	LMDZ_sed config.def ok_aie y
	325	LMDZ_sed config.def read_climoz 2
	326	fi
	327
[1690]	328	# guide.def : Activate nudging if ok_guide=y set in lmdz.card
[1643]	329	if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
	330	LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide}
[1690]	331	else
	332	LMDZ_sed guide.def ok_guide n
[1643]	333	fi
	334
[902]	335	## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
[1172]	336	ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
[1688]	337	if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
[396]	338	awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
	339	IGCM_sys_Mv gcm.def.tmp gcm.def
	340	echo
	341	IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
	342	echo
	343	cat gcm.def
	344	ByPass_hgardfou_teta=n
[902]	345	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
[396]	346	fi
	347
[902]	348	## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
[1172]	349	ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
[1688]	350	if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
[396]	351	sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
	352	IGCM_sys_Mv gcm.def.tmp gcm.def
	353	echo
	354	IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
	355	echo
	356	cat gcm.def
	357	ByPass_hgardfou_mats=n
[902]	358	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
[396]	359	fi
	360
	361	if ( ${FirstInitialize} ) ; then
[1643]	362	if [ -f start.nc ] && [ -f startphy.nc ] ; then
	363	# The restart files already exist. They have been copied from a previous run or from a CREATE job
	364	echo "Restart files for LMDZ have been copied from a previous run"
[1778]	365	elif [ -f create_etat0_limit* ] \|\| [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
[1649]	366	# Do nothing because it is the program for creating restart files that is running and not LMDZ
	367	echo "create_etat0_limit.e will create initial start files"
[1643]	368	else
	369	# Restart files have to be created
	370	echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ"
[396]	371	if [ ${DRYRUN} -le 2 ] ; then
[894]	372	##-- suppression of ozone file construction --
[1643]	373	cp config.def config.def.save
	374	LMDZ_sed config.def read_climoz 0
[396]	375	IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/.
	376	if [ ${DRYRUN} -le 1 ] ; then
[908]	377	${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e
[1643]	378	IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc
	379	IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc
[396]	380	fi
[1643]	381	IGCM_sys_Mv config.def.save config.def
[396]	382	else
[908]	383	echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated"
	384	echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack
[396]	385	fi
	386	fi
	387	fi
	388
	389	IGCM_debug_PopStack "ATM_Update"
	390	}
	391
	392	#-----------------------------------
	393	function ATM_Finalize
	394	{
	395	IGCM_debug_PushStack "ATM_Finalize"
	396
[743]	397	[ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
[396]	398
[1537]	399
	400	# Add special treatement for CARBON CYCLE
[1546]	401	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
[1780]	402	ATM_Carbon_Finalize
	403	fi
[1537]	404
[1780]	405	echo FINALIZE ATM !
[1537]	406
[1780]	407	IGCM_debug_PopStack "ATM_Finalize"
	408	}
[1537]	409
	410
	411
[1780]	412	function ATM_Carbon_Update
	413	{
	414	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
[1537]	415
[1780]	416	IGCM_debug_PushStack "ATM_Carbon_Update"
	417
	418	typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
	419	typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
	420	typeset PathCO2log
	421	typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
	422
	423	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
	424	##--Initialization of fluxes to an undefined value at the first run
	425	UndefinedValueCo2=-9999
	426	InitPeriodCo2=0
	427	InitDateBeginCo2=${UndefinedValueCo2}
	428	InitYearCo2=$(( ${year} - 1 ))
	429	InitDateEndCo2=${InitYearCo2}1231
	430	fCO2_ff=${UndefinedValueCo2}
	431	CO2SBG=${UndefinedValueCo2}
	432	CO2LU=${UndefinedValueCo2}
	433	CO2MBG=${UndefinedValueCo2}
	434	CO2_ppm_prec=${UndefinedValueCo2}
	435	# Get the initial value of atmosp. pco2
	436	CO2_ppm=${lmdz_UserChoices_co2_init}
	437
	438	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
	439	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
	440
[1537]	441	# Save CO2 values in ExeCpuLog variable contents 5 fields
[1780]	442	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
[1537]	443	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
[1780]	444	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	445
	446	# Get the path where the log file co2.log is
	447	PathCO2log=${SUBMIT_DIR}
	448	# Get Previous line in co2.log
	449	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
	450
	451	else
	452
	453	# NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
	454	# !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
	455	#SubmitRestartPath=
	456	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
	457	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
	458	PathCO2log=${config_ATM_SubmitRestartPath}
	459	Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
	460	PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
	461
	462	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
	463	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
	464
	465	# Save Last Line of control in new co2.log file
	466	InitPeriodCo2=0
	467	InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $2}' )
	468	InitDateEndCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $3}' )
	469	fCO2_ff=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $6}' )
	470	CO2SBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $8}' )
	471	CO2LU=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $9}' )
	472	CO2MBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $7}' )
	473	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $5}' )
	474	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	475
	476	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
	477	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
	478	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	479	else
	480	# Get restart line in co2.log
	481	PathCO2log=${SUBMIT_DIR}
	482	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
	483	# Get the value of atmosp. pco2 in co2.log
	484	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	485	fi
	486
[1537]	487	fi
[1780]	488
	489	if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
	490	# Modify co2_ppm in config.def only for historical run
	491	# If not historical run, keep co2_ppm value set earlier by LMDZ_sed
	492	LMDZ_sed config.def co2_ppm ${CO2_ppm}
	493	fi
	494	IGCM_debug_PopStack "ATM_Carbon_Update"
	495	}
[1537]	496
[396]	497
[1780]	498	function ATM_Carbon_Finalize
	499	{
	500	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
	501
	502	IGCM_debug_PushStack "ATM_Carbon_Finalize"
	503
	504	typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
	505
	506	# Fossil fuel emission
	507	if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
	508	# For Control, no fossil fuel emission :
	509	fCO2_ff=0
	510	echo "Fossil Fuel for control run :" ${fCO2_ff}
	511	else
	512	# For historical, get the fossile fuel file :
	513	fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
	514	echo "Fossil Fuel for historical run :" ${fCO2_ff}
	515	fi
	516
	517	# Get the value of ocean carbon flux
	518	CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
	519	CO2MBG=$( echo ${CO2MBG} \| sed -e "s/ *//" )
	520	echo "Ocean carbon flux :" ${CO2MBG}
	521
	522	# Get the value of land fluxes
	523	set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
	524	CO2SRF=$( echo ${CO2SBG_3V[0]} \| sed -e "s/ *//" )
	525	CO2LU=$( echo ${CO2SBG_3V[1]} \| sed -e "s/ *//" )
	526	CO2SBG=$( echo ${CO2SBG_3V[2]} \| sed -e "s/ *//" )
	527	echo "Land carbon flux (NEP) :" ${CO2SRF}
	528	echo "LU flux (FLUC) :" ${CO2LU}
	529	echo "Total Land carbon flux (NBP) :" ${CO2SBG}
	530
	531	# Previous CO2
	532	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
	533	echo "Previous CO2 :" ${CO2_ppm_prec}
	534
	535	# Formula
	536	CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" \| bc -l )
	537	echo "New CO2 :" ${CO2_ppm}
	538
	539	# Save CO2 values in ExeCpuLog variable contents 5 fields
	540	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
	541	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
	542	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
	543
	544	IGCM_debug_PopStack "ATM_Carbon_Finalize"
[396]	545	}

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