1 | #!/bin/ksh |
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2 | #----------------------------------------------------------------- |
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3 | function LMDZ_sed |
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4 | { |
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5 | # Usage : LMDZ_sed filedef var_name myvalue |
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6 | # In file filedef modify the line containing var_name=xxx into var_name=myvalue |
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7 | IGCM_debug_PushStack "LMDZ_sed" |
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8 | |
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9 | # Test if the fichier exist |
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10 | if [ ! -f ${1} ] ; then |
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11 | echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}" |
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12 | IGCM_debug_PopStack "LMDZ_sed" |
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13 | return |
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14 | fi |
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15 | |
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16 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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17 | RET=$? |
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18 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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19 | \mv ${1}.tmp ${1} |
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20 | |
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21 | IGCM_debug_PopStack "LMDZ_sed" |
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22 | return $RET |
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23 | } |
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24 | function LMDZ_sed_default |
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25 | { |
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26 | # Usage : LMDZ_sed_default filedef var_name |
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27 | # In file filedef modify the line "var_name=xxx DEFAULT= myvalue" |
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28 | # into "var_name=myvalue" |
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29 | IGCM_debug_PushStack "LMDZ_sed_default" |
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30 | |
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31 | DefValue=$( grep ${2} ${1} | awk -F"DEFAULT.=*" '{print $2}') |
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32 | |
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33 | LMDZ_sed ${1} ${2} $DefValue |
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34 | IGCM_debug_PopStack "LMDZ_sed_default" |
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35 | return $RET |
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36 | } |
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37 | |
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38 | |
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39 | function ATM_Initialize |
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40 | { |
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41 | IGCM_debug_PushStack "ATM_Initialize" |
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42 | |
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43 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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44 | |
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45 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19 |
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46 | |
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47 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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48 | RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' ) |
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49 | RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' ) |
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50 | RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}" |
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51 | |
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52 | ##-- Calendar type for LMDZ and create_etat0_limit |
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53 | case ${config_UserChoices_CalendarType} in |
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54 | leap|gregorian) |
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55 | CalendarTypeForLmdz=earth_366d |
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56 | CalendarTypeForCreate=gregorian;; |
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57 | noleap) |
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58 | CalendarTypeForLmdz=earth_365d |
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59 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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60 | 360d) |
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61 | CalendarTypeForLmdz=earth_360d |
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62 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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63 | *) |
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64 | CalendarTypeForLmdz=earth_360d |
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65 | CalendarTypeForCreate=${CalendarTypeForLmdz} |
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66 | esac |
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67 | |
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68 | ##- LMDZ physics version |
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69 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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70 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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71 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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72 | else |
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73 | LMDZ_Physics=AP |
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74 | fi |
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75 | echo LMDZ physics version : ${LMDZ_Physics} |
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76 | |
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77 | ##- Create_etat0_limit version |
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78 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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79 | ## This variable is only used in lmdz.card to choose input files. |
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80 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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81 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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82 | CREATE=${lmdz_UserChoices_CREATE} |
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83 | echo create_etat0_limit version : ${CREATE} |
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84 | fi |
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85 | |
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86 | |
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87 | ## - LMDZ choice of config.def file |
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88 | ## ConfType must be set in lmdz.card |
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89 | ConfType=${lmdz_UserChoices_ConfType} |
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90 | |
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91 | ##- LMDZ output level, to be set in lmdz.card |
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92 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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93 | # OutLevel is not set. Take default value low. |
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94 | OutLevel=low |
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95 | else |
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96 | OutLevel=${lmdz_UserChoices_OutLevel} |
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97 | fi |
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98 | |
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99 | ##-- Output frequency purpose .... |
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100 | ##-- Initialisation .... |
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101 | ok_mensuel=n |
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102 | ok_journe=n |
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103 | ok_hf=n |
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104 | ok_hf3h=n |
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105 | ok_hf3hm=n |
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106 | ok_stn=n |
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107 | |
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108 | case ${config_UserChoices_PeriodLength} in |
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109 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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110 | 5D|5d|1D|1d) ok_journe=y ;; |
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111 | esac |
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112 | |
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113 | for frequency in ${config_ATM_WriteFrequency} ; do |
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114 | case ${frequency} in |
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115 | 1M|1m) ok_mensuel=y ;; |
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116 | esac |
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117 | case ${frequency} in |
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118 | 5D|5d|1D|1d) ok_journe=y ;; |
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119 | esac |
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120 | case ${frequency} in |
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121 | HF|hf) ok_hf=y ;; |
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122 | esac |
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123 | case ${frequency} in |
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124 | HF3h|hf3h) ok_hf3h=y ;; |
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125 | esac |
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126 | case ${frequency} in |
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127 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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128 | esac |
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129 | case ${frequency} in |
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130 | STN|stn) ok_stn=y ;; |
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131 | esac |
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132 | done |
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133 | |
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134 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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135 | if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then |
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136 | # The variable is not in lmdz.card, set default value |
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137 | LMDZ_NbPeriod_adjust=0 |
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138 | else |
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139 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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140 | fi |
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141 | |
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142 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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143 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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144 | fi |
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145 | |
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146 | |
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147 | ## Read LMDZ_COSP_OK in lmdz.card |
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148 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then |
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149 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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150 | else |
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151 | LMDZ_COSP_OK=n |
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152 | fi |
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153 | ## Read LMDZ_COSP_monthly in lmdz.card |
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154 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then |
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155 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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156 | else |
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157 | LMDZ_COSP_monthly=n |
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158 | fi |
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159 | ## Read LMDZ_COSP_daily in lmdz.card |
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160 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then |
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161 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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162 | else |
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163 | LMDZ_COSP_daily=n |
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164 | fi |
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165 | ## Read LMDZ_COSP_hf in lmdz.card |
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166 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then |
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167 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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168 | else |
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169 | LMDZ_COSP_hf=n |
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170 | fi |
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171 | |
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172 | ## Read LMDZ_NMC_monthly in lmdz.card |
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173 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then |
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174 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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175 | else |
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176 | LMDZ_NMC_monthly=n |
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177 | fi |
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178 | |
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179 | ## Read LMDZ_NMC_daily in lmdz.card |
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180 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then |
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181 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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182 | else |
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183 | LMDZ_NMC_daily=n |
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184 | fi |
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185 | |
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186 | ## Read LMDZ_NMC_hf in lmdz.card |
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187 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then |
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188 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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189 | else |
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190 | LMDZ_NMC_hf=n |
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191 | fi |
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192 | |
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193 | |
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194 | IGCM_debug_PopStack "ATM_Initialize" |
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195 | } |
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196 | |
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197 | #----------------------------------------------------------------- |
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198 | function ATM_Update |
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199 | { |
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200 | IGCM_debug_PushStack "ATM_Update" |
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201 | |
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202 | |
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203 | case ${config_UserChoices_PeriodLength} in |
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204 | *Y|*y) |
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205 | LMDZ_ecrit_ISCCP=30. |
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206 | LMDZ_periodav=30. |
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207 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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208 | echo Do not consider following warning if your running create_etat0_limit : |
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209 | echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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210 | fi |
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211 | ;; |
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212 | *) |
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213 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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214 | LMDZ_periodav=${PeriodLengthInDays}. |
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215 | ;; |
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216 | esac |
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217 | |
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218 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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219 | if [ ${CumulPeriod} -eq 1 ] ; then |
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220 | RAZ_DATE=1 |
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221 | else |
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222 | RAZ_DATE=0 |
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223 | fi |
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224 | |
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225 | ## Algorithme for special treatment for Bands_xxx file |
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226 | ## For CumulPeriod=1 ; |
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227 | ## IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n |
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228 | ## IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix. |
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229 | ## IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix. |
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230 | ## ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ; |
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231 | ## |
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232 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; |
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233 | ## Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ; |
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234 | ## |
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235 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ; |
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236 | |
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237 | if [ ${CumulPeriod} -eq 1 ] ; then |
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238 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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239 | if [ ! X${LMDZ_Bands_file_name} = X ] ; then |
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240 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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241 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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242 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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243 | fi |
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244 | fi |
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245 | fi |
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246 | |
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247 | LMDZ_adjust=n |
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248 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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249 | |
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250 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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251 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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252 | |
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253 | # Get Bands file from PARAM directory if file exist |
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254 | if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then |
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255 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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256 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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257 | fi |
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258 | |
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259 | ##-- GHG forcing : |
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260 | ## If forcing file exist in run directory, read values for the current year |
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261 | ## and set in config.def. If not use the default value set in config.def |
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262 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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263 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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264 | if [ X"${IPCC_SOLAR}" = X ] ; then |
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265 | # The grep returned empty variable, stop execution |
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266 | IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year." |
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267 | IGCM_debug_Verif_Exit |
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268 | else |
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269 | # Set new variable in config.def file |
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270 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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271 | fi |
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272 | else |
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273 | LMDZ_sed_default config.def solaire |
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274 | fi |
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275 | |
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276 | if [ -f CO2.txt ] ; then |
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277 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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278 | if [ X"${IPCC_CO2}" = X ] ; then |
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279 | # The grep returned empty variable, stop execution |
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280 | IGCM_debug_Exit "The file CO2.txt do not contain the current year." |
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281 | IGCM_debug_Verif_Exit |
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282 | else |
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283 | # Set new variable in config.def file |
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284 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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285 | fi |
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286 | else |
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287 | LMDZ_sed_default config.def co2_ppm |
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288 | fi |
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289 | |
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290 | if [ -f CH4.txt ] ; then |
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291 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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292 | if [ X"${IPCC_CH4}" = X ] ; then |
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293 | # The grep returned empty variable, stop execution |
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294 | IGCM_debug_Exit "The file CH4.txt do not contain the current year." |
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295 | IGCM_debug_Verif_Exit |
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296 | else |
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297 | # Set new variable in config.def file |
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298 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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299 | fi |
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300 | else |
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301 | LMDZ_sed_default config.def CH4_ppb |
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302 | fi |
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303 | |
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304 | if [ -f N2O.txt ] ; then |
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305 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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306 | if [ X"${IPCC_N2O}" = X ] ; then |
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307 | # The grep returned empty variable, stop execution |
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308 | IGCM_debug_Exit "The file N2O.txt do not contain the current year." |
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309 | IGCM_debug_Verif_Exit |
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310 | else |
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311 | # Set new variable in config.def file |
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312 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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313 | fi |
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314 | else |
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315 | LMDZ_sed_default config.def N2O_ppb |
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316 | fi |
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317 | |
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318 | if [ -f CFC11.txt ] ; then |
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319 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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320 | if [ X"${IPCC_CFC11}" = X ] ; then |
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321 | # The grep returned empty variable, stop execution |
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322 | IGCM_debug_Exit "The file CFC11.txt do not contain the current year." |
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323 | IGCM_debug_Verif_Exit |
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324 | else |
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325 | # Set new variable in config.def file |
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326 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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327 | fi |
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328 | else |
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329 | LMDZ_sed_default config.def CFC11_ppt |
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330 | fi |
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331 | |
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332 | if [ -f CFC12.txt ] ; then |
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333 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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334 | if [ X"${IPCC_CFC12}" = X ] ; then |
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335 | # The grep returned empty variable, stop execution |
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336 | IGCM_debug_Exit "The file CFC12.txt do not contain the current year." |
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337 | IGCM_debug_Verif_Exit |
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338 | else |
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339 | # Set new variable in config.def file |
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340 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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341 | fi |
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342 | else |
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343 | LMDZ_sed_default config.def CFC12_ppt |
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344 | fi |
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345 | |
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346 | |
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347 | ##-- Add special treatement for CARBON CYCLE |
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348 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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349 | ATM_Carbon_Update |
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350 | fi |
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351 | |
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352 | |
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353 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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354 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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355 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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356 | LMDZ_COSP_daily=y |
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357 | fi |
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358 | |
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359 | |
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360 | ## output.def parameters |
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361 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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362 | # histmth histday histhf histfh3h histhf3hm histstn |
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363 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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364 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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365 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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366 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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367 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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368 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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369 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}" |
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370 | |
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371 | ## gcm.def parameters : |
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372 | # Modification for timestep in physics due to differnt type of physics |
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373 | # To know the time step in minutes the physics part of LMDZ use: 1440/day_step*ipysiq/nsplit_phys |
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374 | if [ X${LMDZ_Physics} = X"NPv3.1" ] && [ ${RESOL_ATM_3D} = 96x95x39 ] ; then |
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375 | # Time step in physics: 7.5min |
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376 | LMDZ_sed gcm.def iphysiq 5 |
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377 | elif [ X${LMDZ_Physics} = X"NPv3.1" ] && [ ${RESOL_ATM_3D} = 144x142x39 ] ; then |
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378 | # Time step in physics: 10min |
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379 | LMDZ_sed gcm.def iphysiq 5 |
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380 | elif [ X${LMDZ_Physics} = X"NPv3.2" ] && [ ${RESOL_ATM_3D} = 96x95x39 ] ; then |
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381 | # Time step in physics: 15min |
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382 | LMDZ_sed gcm.def iphysiq 5 |
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383 | elif [ X${LMDZ_Physics} = X"NPv3.2" ] && [ ${RESOL_ATM_3D} = 144x142x39 ] ; then |
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384 | # Time step in physics: 10min |
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385 | LMDZ_sed gcm.def iphysiq 5 |
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386 | elif [ X${LMDZ_Physics} = X"NPv3.2" ] && [ ${RESOL_ATM_3D} = 128x118x39 ] ; then |
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387 | # Time step in physics: 7.5min |
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388 | LMDZ_sed gcm.def iphysiq 15 |
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389 | elif [ X${LMDZ_Physics} = X"AP" ] ; then |
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390 | # Time step in physics: 30min |
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391 | # Use default value for old physics |
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392 | LMDZ_sed_default gcm.def iphysiq |
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393 | else |
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394 | # Warning this combination has not been prepared |
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395 | echo "" |
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396 | echo "WARNING!! LMDZ_Physics=${LMDZ_Physics} has not been tested with resolution ${RESOL_ATM_3D}." |
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397 | echo " => The default timestep for iphysiq will be used. " |
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398 | echo " => You can change the default time step in gcm.def_${RESOL_ATM_3D} but be carefull to keep the syntax: iphysiq=_AUTO_ : DEFAULT = new_value" |
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399 | echo " => Calculate new time step in minutes in the physics of LMDZ as : 1440/day_step*ipysiq/nsplit_phys" |
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400 | LMDZ_sed_default gcm.def iphysiq |
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401 | echo "" |
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402 | fi |
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403 | |
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404 | |
---|
405 | |
---|
406 | ## run.def parameters |
---|
407 | LMDZ_sed run.def dayref ${InitDay} |
---|
408 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
---|
409 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
---|
410 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
---|
411 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
---|
412 | |
---|
413 | # Set anneeref different for gcm and ce0l |
---|
414 | # Variable calend is different for a run with create_etat0_limit and the gcm |
---|
415 | # Test if executable create_etat0_limit is present and lmdz.x is not present |
---|
416 | if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
---|
417 | # for case ce0l : always take current year |
---|
418 | LMDZ_sed run.def anneeref ${year} |
---|
419 | LMDZ_sed run.def calend ${CalendarTypeForCreate} |
---|
420 | else |
---|
421 | # for case gcm : take first year of simulation |
---|
422 | LMDZ_sed run.def anneeref ${InitYear} |
---|
423 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
---|
424 | fi |
---|
425 | |
---|
426 | # Activate creation of file grilles_gcm.nc only at first period |
---|
427 | if [ ${CumulPeriod} -eq 1 ] ; then |
---|
428 | LMDZ_sed run.def grilles_gcm_netcdf y |
---|
429 | else |
---|
430 | LMDZ_sed run.def grilles_gcm_netcdf n |
---|
431 | fi |
---|
432 | |
---|
433 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
---|
434 | ## and set corresponding parameters in run.def |
---|
435 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
---|
436 | |
---|
437 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
---|
438 | echo "Activate ORCHIDEE: set VEGET=y and add INCLUDEDEF=orchidee.def in run.def" |
---|
439 | LMDZ_sed run.def VEGET y |
---|
440 | # Add "INCLUDEDEF=orchidee.def" before the 5th line in run.def |
---|
441 | sed -i '5iINCLUDEDEF=orchidee.def' run.def |
---|
442 | else |
---|
443 | echo "No ORCHIDEE, set VEGET=n in run.def" |
---|
444 | LMDZ_sed run.def VEGET n |
---|
445 | fi |
---|
446 | |
---|
447 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
---|
448 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
---|
449 | LMDZ_sed run.def type_ocean couple |
---|
450 | else |
---|
451 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
---|
452 | LMDZ_sed run.def type_ocean force |
---|
453 | fi |
---|
454 | |
---|
455 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
---|
456 | echo "Activate coupling to INCA: set type_trac=inca and add INCLUDEDEF=inca.def in run.def" |
---|
457 | LMDZ_sed run.def type_trac inca |
---|
458 | # Add "INCLUDEDEF=inca.def" before the 5th line in run.def |
---|
459 | sed -i '5iINCLUDEDEF=inca.def' run.def |
---|
460 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
---|
461 | echo "Activate coupling to REPROBUS: set type_trac=repr and add INCLUDEDEF=reprobus.def in run.def" |
---|
462 | LMDZ_sed run.def type_trac repr |
---|
463 | LMDZ_sed run.def config_inca none |
---|
464 | # Add "INCLUDEDEF=reprobus.def" before the 5th line in run.def |
---|
465 | sed -i '5iINCLUDEDEF=reprobus.def' run.def |
---|
466 | else |
---|
467 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
---|
468 | LMDZ_sed run.def type_trac lmdz |
---|
469 | LMDZ_sed run.def config_inca none |
---|
470 | fi |
---|
471 | |
---|
472 | |
---|
473 | # config.def : Activate direct radiative effect if ok_ade=y |
---|
474 | if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then |
---|
475 | LMDZ_sed config.def ok_ade ${lmdz_UserChoices_ok_ade} |
---|
476 | else |
---|
477 | LMDZ_sed config.def ok_ade n |
---|
478 | fi |
---|
479 | |
---|
480 | # config.def : Activate indirect radiative effect if ok_aie=y |
---|
481 | if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then |
---|
482 | LMDZ_sed config.def ok_aie ${lmdz_UserChoices_ok_aie} |
---|
483 | else |
---|
484 | LMDZ_sed config.def ok_aie n |
---|
485 | fi |
---|
486 | |
---|
487 | # config.def : Activate online aerosol coupled model if aerosol_couple=y |
---|
488 | if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then |
---|
489 | LMDZ_sed config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple} |
---|
490 | else |
---|
491 | LMDZ_sed config.def aerosol_couple n |
---|
492 | fi |
---|
493 | |
---|
494 | # config.def : Activate reading of ozone in climatology if read_climoz=2 |
---|
495 | if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then |
---|
496 | LMDZ_sed config.def read_climoz ${lmdz_UserChoices_read_climoz} |
---|
497 | else |
---|
498 | LMDZ_sed config.def read_climoz 0 |
---|
499 | fi |
---|
500 | |
---|
501 | # config.def : Choose aerosol use in radiative effect |
---|
502 | # type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only |
---|
503 | # =5 => dust only =6 => all aerosol |
---|
504 | if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then |
---|
505 | LMDZ_sed config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol} |
---|
506 | else |
---|
507 | LMDZ_sed config.def flag_aerosol 0 |
---|
508 | fi |
---|
509 | |
---|
510 | # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y |
---|
511 | if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then |
---|
512 | LMDZ_sed config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc} |
---|
513 | else |
---|
514 | LMDZ_sed config.def ok_cdnc n |
---|
515 | fi |
---|
516 | |
---|
517 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
---|
518 | if [ X${lmdz_UserChoices_ok_guide} = Xy ] ; then |
---|
519 | # Set ok_guide=y in guide.def |
---|
520 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
---|
521 | # Add "INCLUDEDEF=guide.def" before the 5th line in run.def |
---|
522 | sed -i '5iINCLUDEDEF=guide.def' run.def |
---|
523 | else |
---|
524 | LMDZ_sed guide.def ok_guide n |
---|
525 | fi |
---|
526 | |
---|
527 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
---|
528 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
---|
529 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
---|
530 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
---|
531 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
532 | echo |
---|
533 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
---|
534 | echo |
---|
535 | cat gcm.def |
---|
536 | ByPass_hgardfou_teta=n |
---|
537 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
---|
538 | fi |
---|
539 | |
---|
540 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
---|
541 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
---|
542 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
---|
543 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
---|
544 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
545 | echo |
---|
546 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
---|
547 | echo |
---|
548 | cat gcm.def |
---|
549 | ByPass_hgardfou_mats=n |
---|
550 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
---|
551 | fi |
---|
552 | |
---|
553 | if ( ${FirstInitialize} ) ; then |
---|
554 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
---|
555 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
---|
556 | echo "Restart files for LMDZ have been copied from a previous run" |
---|
557 | elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
---|
558 | # Do nothing because it is the program for creating restart files that is running and not LMDZ |
---|
559 | echo "create_etat0_limit.e will create initial start files" |
---|
560 | else |
---|
561 | # Restart files have to be created |
---|
562 | # Old option. Now removed. |
---|
563 | echo "REMOVED OPTION: Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
---|
564 | echo "You must now create start.nc and startphy.nc before launching the model or use restart files" |
---|
565 | IGCM_debug_Exit "ATM_Update: start.nc and startphy.nc files are missing!" |
---|
566 | IGCM_debug_Verif_Exit |
---|
567 | fi |
---|
568 | fi |
---|
569 | |
---|
570 | IGCM_debug_PopStack "ATM_Update" |
---|
571 | } |
---|
572 | |
---|
573 | #----------------------------------- |
---|
574 | function ATM_Finalize |
---|
575 | { |
---|
576 | IGCM_debug_PushStack "ATM_Finalize" |
---|
577 | |
---|
578 | # If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation. |
---|
579 | # Copy also the same file into ATM/Restart at ARCHIVE directory for backup. |
---|
580 | if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then |
---|
581 | if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then |
---|
582 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
583 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
584 | elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
---|
585 | # Special case : first period and no adjust => Save bands file with suffix _0 |
---|
586 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
587 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
588 | fi |
---|
589 | fi |
---|
590 | |
---|
591 | # Add special treatement for CARBON CYCLE |
---|
592 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
---|
593 | ATM_Carbon_Finalize |
---|
594 | fi |
---|
595 | |
---|
596 | echo FINALIZE ATM ! |
---|
597 | |
---|
598 | IGCM_debug_PopStack "ATM_Finalize" |
---|
599 | } |
---|
600 | |
---|
601 | |
---|
602 | |
---|
603 | function ATM_Carbon_Update |
---|
604 | { |
---|
605 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
606 | |
---|
607 | IGCM_debug_PushStack "ATM_Carbon_Update" |
---|
608 | |
---|
609 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
---|
610 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
611 | typeset PathCO2log |
---|
612 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
---|
613 | |
---|
614 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
---|
615 | ##--Initialization of fluxes to an undefined value at the first run |
---|
616 | UndefinedValueCo2=-9999 |
---|
617 | InitPeriodCo2=0 |
---|
618 | InitDateBeginCo2=${UndefinedValueCo2} |
---|
619 | InitYearCo2=$(( ${year} - 1 )) |
---|
620 | InitDateEndCo2=${InitYearCo2}1231 |
---|
621 | fCO2_ff=${UndefinedValueCo2} |
---|
622 | CO2SBG=${UndefinedValueCo2} |
---|
623 | CO2LU=${UndefinedValueCo2} |
---|
624 | CO2MBG=${UndefinedValueCo2} |
---|
625 | CO2_ppm_prec=${UndefinedValueCo2} |
---|
626 | # Get the initial value of atmosp. pco2 |
---|
627 | CO2_ppm=${lmdz_UserChoices_co2_init} |
---|
628 | |
---|
629 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
630 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
631 | |
---|
632 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
633 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
634 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
635 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
636 | |
---|
637 | # Get the path where the log file co2.log is |
---|
638 | PathCO2log=${SUBMIT_DIR} |
---|
639 | # Get Previous line in co2.log |
---|
640 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
641 | |
---|
642 | else |
---|
643 | |
---|
644 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
---|
645 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
---|
646 | #SubmitRestartPath= |
---|
647 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
---|
648 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
---|
649 | PathCO2log=${config_ATM_SubmitRestartPath} |
---|
650 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
---|
651 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
---|
652 | |
---|
653 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
654 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
655 | |
---|
656 | # Save Last Line of control in new co2.log file |
---|
657 | InitPeriodCo2=0 |
---|
658 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
---|
659 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
---|
660 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
---|
661 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
---|
662 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
---|
663 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
---|
664 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
---|
665 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
666 | |
---|
667 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
668 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
669 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
670 | else |
---|
671 | # Get restart line in co2.log |
---|
672 | PathCO2log=${SUBMIT_DIR} |
---|
673 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
674 | # Get the value of atmosp. pco2 in co2.log |
---|
675 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
676 | fi |
---|
677 | |
---|
678 | fi |
---|
679 | |
---|
680 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
---|
681 | # Modify co2_ppm in config.def only for historical run |
---|
682 | # If not historical run, keep co2_ppm value set earlier by LMDZ_sed |
---|
683 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
---|
684 | fi |
---|
685 | IGCM_debug_PopStack "ATM_Carbon_Update" |
---|
686 | } |
---|
687 | |
---|
688 | |
---|
689 | function ATM_Carbon_Finalize |
---|
690 | { |
---|
691 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
692 | |
---|
693 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
---|
694 | |
---|
695 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
696 | |
---|
697 | # Fossil fuel emission |
---|
698 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
---|
699 | # For Control, no fossil fuel emission : |
---|
700 | fCO2_ff=0 |
---|
701 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
---|
702 | else |
---|
703 | # For historical, get the fossile fuel file : |
---|
704 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
---|
705 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
---|
706 | fi |
---|
707 | |
---|
708 | # Get the value of ocean carbon flux |
---|
709 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
---|
710 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
---|
711 | echo "Ocean carbon flux :" ${CO2MBG} |
---|
712 | |
---|
713 | # Get the value of land fluxes |
---|
714 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
---|
715 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
---|
716 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
---|
717 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
---|
718 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
719 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
720 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
---|
721 | |
---|
722 | # Previous CO2 |
---|
723 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
724 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
725 | |
---|
726 | # Formula |
---|
727 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
728 | echo "New CO2 :" ${CO2_ppm} |
---|
729 | |
---|
730 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
731 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
732 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
733 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
734 | |
---|
735 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
736 | } |
---|