[396] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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[894] | 3 | function LMDZ_sed |
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| 4 | { |
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[1690] | 5 | # Usage : LMDZ_sed filedef var_name myvalue |
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| 6 | # In file filedef modify the line containing var_name=xxx into var_name=myvalue |
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[894] | 7 | IGCM_debug_PushStack "LMDZ_sed" |
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[1783] | 8 | |
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| 9 | # Test if the fichier exist |
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| 10 | if [ ! -f ${1} ] ; then |
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| 11 | echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}" |
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[2208] | 12 | IGCM_debug_PopStack "LMDZ_sed" |
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[1783] | 13 | return |
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| 14 | fi |
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[894] | 15 | |
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[911] | 16 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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[894] | 17 | RET=$? |
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| 18 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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| 19 | \mv ${1}.tmp ${1} |
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| 20 | |
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| 21 | IGCM_debug_PopStack "LMDZ_sed" |
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| 22 | return $RET |
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| 23 | } |
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[1690] | 24 | function LMDZ_sed_default |
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| 25 | { |
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| 26 | # Usage : LMDZ_sed_default filedef var_name |
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| 27 | # In file filedef modify the line "var_name=xxx DEFAULT= myvalue" |
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| 28 | # into "var_name=myvalue" |
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| 29 | IGCM_debug_PushStack "LMDZ_sed_default" |
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[894] | 30 | |
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[1690] | 31 | DefValue=$( grep ${2} ${1} | awk -F"DEFAULT.=*" '{print $2}') |
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| 32 | |
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| 33 | LMDZ_sed ${1} ${2} $DefValue |
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| 34 | IGCM_debug_PopStack "LMDZ_sed_default" |
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| 35 | return $RET |
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| 36 | } |
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| 37 | |
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| 38 | |
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[396] | 39 | function ATM_Initialize |
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| 40 | { |
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| 41 | IGCM_debug_PushStack "ATM_Initialize" |
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| 42 | |
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[671] | 43 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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[396] | 44 | |
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[659] | 45 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19 |
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[396] | 46 | |
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[659] | 47 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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[1802] | 48 | RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' ) |
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| 49 | RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' ) |
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| 50 | RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}" |
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[649] | 51 | |
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[1923] | 52 | ##-- Calendar type for LMDZ and create_etat0_limit |
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[697] | 53 | case ${config_UserChoices_CalendarType} in |
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| 54 | leap|gregorian) |
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[1923] | 55 | CalendarTypeForLmdz=earth_366d |
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| 56 | CalendarTypeForCreate=gregorian;; |
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[697] | 57 | noleap) |
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[1923] | 58 | CalendarTypeForLmdz=earth_365d |
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| 59 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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[697] | 60 | 360d) |
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[1923] | 61 | CalendarTypeForLmdz=earth_360d |
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| 62 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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[697] | 63 | *) |
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| 64 | CalendarTypeForLmdz=earth_360d |
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[1923] | 65 | CalendarTypeForCreate=${CalendarTypeForLmdz} |
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[697] | 66 | esac |
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| 67 | |
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[1541] | 68 | ##- LMDZ physics version |
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| 69 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 70 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 71 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 72 | else |
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| 73 | LMDZ_Physics=AP |
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| 74 | fi |
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| 75 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 76 | |
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[1643] | 77 | ##- Create_etat0_limit version |
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[1782] | 78 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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| 79 | ## This variable is only used in lmdz.card to choose input files. |
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| 80 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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| 81 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 82 | CREATE=${lmdz_UserChoices_CREATE} |
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| 83 | echo create_etat0_limit version : ${CREATE} |
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| 84 | fi |
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[1643] | 85 | |
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[1782] | 86 | |
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[1550] | 87 | ## - LMDZ choice of config.def file |
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| 88 | ## ConfType must be set in lmdz.card |
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| 89 | ConfType=${lmdz_UserChoices_ConfType} |
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[1541] | 90 | |
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[1550] | 91 | ##- LMDZ output level, to be set in lmdz.card |
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| 92 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 93 | # OutLevel is not set. Take default value low. |
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| 94 | OutLevel=low |
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| 95 | else |
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| 96 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 97 | fi |
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| 98 | |
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[1539] | 99 | ##-- Output frequency purpose .... |
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[396] | 100 | ##-- Initialisation .... |
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[1539] | 101 | ok_mensuel=n |
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| 102 | ok_journe=n |
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[396] | 103 | ok_hf=n |
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[1539] | 104 | ok_hf3h=n |
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| 105 | ok_hf3hm=n |
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| 106 | ok_stn=n |
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[396] | 107 | |
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| 108 | case ${config_UserChoices_PeriodLength} in |
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[1539] | 109 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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| 110 | 5D|5d|1D|1d) ok_journe=y ;; |
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[396] | 111 | esac |
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| 112 | |
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| 113 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 114 | case ${frequency} in |
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[1539] | 115 | 1M|1m) ok_mensuel=y ;; |
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[396] | 116 | esac |
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| 117 | case ${frequency} in |
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[1539] | 118 | 5D|5d|1D|1d) ok_journe=y ;; |
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| 119 | esac |
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| 120 | case ${frequency} in |
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[396] | 121 | HF|hf) ok_hf=y ;; |
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| 122 | esac |
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[1539] | 123 | case ${frequency} in |
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| 124 | HF3h|hf3h) ok_hf3h=y ;; |
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| 125 | esac |
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| 126 | case ${frequency} in |
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| 127 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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| 128 | esac |
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| 129 | case ${frequency} in |
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| 130 | STN|stn) ok_stn=y ;; |
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| 131 | esac |
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[396] | 132 | done |
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| 133 | |
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[902] | 134 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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[1688] | 135 | if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then |
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| 136 | # The variable is not in lmdz.card, set default value |
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| 137 | LMDZ_NbPeriod_adjust=0 |
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| 138 | else |
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| 139 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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| 140 | fi |
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[396] | 141 | |
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[815] | 142 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1688] | 143 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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[815] | 144 | fi |
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| 145 | |
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[912] | 146 | |
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[1783] | 147 | ## Read LMDZ_COSP_OK in lmdz.card |
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| 148 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then |
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| 149 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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| 150 | else |
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| 151 | LMDZ_COSP_OK=n |
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| 152 | fi |
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| 153 | ## Read LMDZ_COSP_monthly in lmdz.card |
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| 154 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then |
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| 155 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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| 156 | else |
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| 157 | LMDZ_COSP_monthly=n |
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| 158 | fi |
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| 159 | ## Read LMDZ_COSP_daily in lmdz.card |
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| 160 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then |
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| 161 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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| 162 | else |
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| 163 | LMDZ_COSP_daily=n |
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| 164 | fi |
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| 165 | ## Read LMDZ_COSP_hf in lmdz.card |
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| 166 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then |
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| 167 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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| 168 | else |
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| 169 | LMDZ_COSP_hf=n |
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| 170 | fi |
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[1000] | 171 | |
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[1783] | 172 | ## Read LMDZ_NMC_monthly in lmdz.card |
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| 173 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then |
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| 174 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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| 175 | else |
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| 176 | LMDZ_NMC_monthly=n |
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| 177 | fi |
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[1000] | 178 | |
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[1783] | 179 | ## Read LMDZ_NMC_daily in lmdz.card |
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| 180 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then |
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| 181 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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| 182 | else |
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| 183 | LMDZ_NMC_daily=n |
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| 184 | fi |
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| 185 | |
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| 186 | ## Read LMDZ_NMC_hf in lmdz.card |
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| 187 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then |
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| 188 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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| 189 | else |
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| 190 | LMDZ_NMC_hf=n |
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| 191 | fi |
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| 192 | |
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| 193 | |
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[396] | 194 | IGCM_debug_PopStack "ATM_Initialize" |
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| 195 | } |
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| 196 | |
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| 197 | #----------------------------------------------------------------- |
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| 198 | function ATM_Update |
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| 199 | { |
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| 200 | IGCM_debug_PushStack "ATM_Update" |
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| 201 | |
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[1537] | 202 | |
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[749] | 203 | case ${config_UserChoices_PeriodLength} in |
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| 204 | *Y|*y) |
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| 205 | LMDZ_ecrit_ISCCP=30. |
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| 206 | LMDZ_periodav=30. |
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[755] | 207 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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[1649] | 208 | echo Do not consider following warning if your running create_etat0_limit : |
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[1650] | 209 | echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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[1649] | 210 | fi |
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[749] | 211 | ;; |
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| 212 | *) |
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| 213 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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| 214 | LMDZ_periodav=${PeriodLengthInDays}. |
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| 215 | ;; |
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| 216 | esac |
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[1546] | 217 | |
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[396] | 218 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 219 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 220 | RAZ_DATE=1 |
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| 221 | else |
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| 222 | RAZ_DATE=0 |
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| 223 | fi |
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| 224 | |
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[1892] | 225 | ## Algorithme for special treatment for Bands_xxx file |
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| 226 | ## For CumulPeriod=1 ; |
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| 227 | ## IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n |
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| 228 | ## IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix. |
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| 229 | ## IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix. |
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| 230 | ## ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ; |
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| 231 | ## |
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| 232 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; |
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| 233 | ## Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ; |
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| 234 | ## |
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| 235 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ; |
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[815] | 236 | |
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| 237 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 238 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1778] | 239 | if [ ! X${LMDZ_Bands_file_name} = X ] ; then |
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[1688] | 240 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 241 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 242 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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| 243 | fi |
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[815] | 244 | fi |
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| 245 | fi |
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| 246 | |
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[743] | 247 | LMDZ_adjust=n |
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| 248 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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| 249 | |
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[815] | 250 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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| 251 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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[743] | 252 | |
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[1897] | 253 | # Get Bands file from PARAM directory if file exist |
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[1998] | 254 | if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then |
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[1894] | 255 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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[1892] | 256 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 257 | fi |
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[743] | 258 | |
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[1535] | 259 | ##-- GHG forcing : |
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[1546] | 260 | ## If forcing file exist in run directory, read values for the current year and modify config.def |
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[1535] | 261 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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| 262 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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[1546] | 263 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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[1690] | 264 | else |
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| 265 | LMDZ_sed_default config.def solaire |
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[1535] | 266 | fi |
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| 267 | if [ -f CO2.txt ] ; then |
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| 268 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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[1546] | 269 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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[1690] | 270 | else |
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| 271 | LMDZ_sed_default config.def co2_ppm |
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[1535] | 272 | fi |
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[1690] | 273 | |
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| 274 | |
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[1535] | 275 | if [ -f CH4.txt ] ; then |
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| 276 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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[1546] | 277 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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[1690] | 278 | else |
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| 279 | LMDZ_sed_default config.def CH4_ppb |
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[1535] | 280 | fi |
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| 281 | if [ -f N2O.txt ] ; then |
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| 282 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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[1546] | 283 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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[1690] | 284 | else |
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| 285 | LMDZ_sed_default config.def N2O_ppb |
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[1535] | 286 | fi |
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| 287 | if [ -f CFC11.txt ] ; then |
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| 288 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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[1546] | 289 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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[1690] | 290 | else |
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| 291 | LMDZ_sed_default config.def CFC11_ppt |
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[1535] | 292 | fi |
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| 293 | if [ -f CFC12.txt ] ; then |
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| 294 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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[1546] | 295 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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[1690] | 296 | else |
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| 297 | LMDZ_sed_default config.def CFC12_ppt |
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[1535] | 298 | fi |
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| 299 | |
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[1780] | 300 | |
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| 301 | ##-- Add special treatement for CARBON CYCLE |
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[1546] | 302 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1780] | 303 | ATM_Carbon_Update |
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| 304 | fi |
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[1537] | 305 | |
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| 306 | |
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[1538] | 307 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 308 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 309 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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| 310 | LMDZ_COSP_daily=y |
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| 311 | fi |
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[1537] | 312 | |
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[1538] | 313 | |
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[1540] | 314 | ## output.def parameters |
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[1546] | 315 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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[1539] | 316 | # histmth histday histhf histfh3h histhf3hm histstn |
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[1546] | 317 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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[1540] | 318 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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| 319 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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| 320 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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| 321 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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| 322 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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[1783] | 323 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}" |
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[396] | 324 | |
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[1544] | 325 | ## gcm.def parameters : |
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| 326 | # Modification only for new physics |
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[1750] | 327 | if [ X${LMDZ_Physics} = X"NPv3.1" ] ; then |
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[1544] | 328 | LMDZ_sed gcm.def iphysiq 5 |
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[1690] | 329 | else |
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| 330 | LMDZ_sed_default gcm.def iphysiq |
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[1544] | 331 | fi |
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[396] | 332 | |
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[1544] | 333 | |
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[911] | 334 | ## run.def parameters |
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| 335 | LMDZ_sed run.def dayref ${InitDay} |
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| 336 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
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| 337 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
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| 338 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
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| 339 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
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[396] | 340 | |
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[1804] | 341 | # Set anneeref different for gcm and ce0l |
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[1923] | 342 | # Variable calend is different for a run with create_etat0_limit and the gcm |
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[1804] | 343 | # Test if executable create_etat0_limit is present and lmdz.x is not present |
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| 344 | if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
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| 345 | # for case ce0l : always take current year |
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| 346 | LMDZ_sed run.def anneeref ${year} |
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[1923] | 347 | LMDZ_sed run.def calend ${CalendarTypeForCreate} |
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[1804] | 348 | else |
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| 349 | # for case gcm : take first year of simulation |
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| 350 | LMDZ_sed run.def anneeref ${InitYear} |
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[1923] | 351 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
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[1804] | 352 | fi |
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[1643] | 353 | |
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[1804] | 354 | # Activate creation of file grilles_gcm.nc only at first period |
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| 355 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 356 | LMDZ_sed run.def grilles_gcm_netcdf y |
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| 357 | else |
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| 358 | LMDZ_sed run.def grilles_gcm_netcdf n |
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| 359 | fi |
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| 360 | |
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[1650] | 361 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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| 362 | ## and set corresponding parameters in run.def |
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| 363 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
---|
| 364 | |
---|
| 365 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
---|
[2101] | 366 | echo "Activate ORCHIDEE: set VEGET=y and add INCLUDEDEF=orchidee.def in run.def" |
---|
[1650] | 367 | LMDZ_sed run.def VEGET y |
---|
[2101] | 368 | # Add "INCLUDEDEF=orchidee.def" before the 5th line in run.def |
---|
| 369 | sed -i '5iINCLUDEDEF=orchidee.def' run.def |
---|
[1650] | 370 | else |
---|
| 371 | echo "No ORCHIDEE, set VEGET=n in run.def" |
---|
| 372 | LMDZ_sed run.def VEGET n |
---|
| 373 | fi |
---|
| 374 | |
---|
| 375 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
---|
| 376 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
---|
| 377 | LMDZ_sed run.def type_ocean couple |
---|
| 378 | else |
---|
| 379 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
---|
| 380 | LMDZ_sed run.def type_ocean force |
---|
| 381 | fi |
---|
| 382 | |
---|
| 383 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
---|
[2101] | 384 | echo "Activate coupling to INCA: set type_trac=inca and add INCLUDEDEF=inca.def in run.def" |
---|
[1667] | 385 | LMDZ_sed run.def type_trac inca |
---|
[2101] | 386 | # Add "INCLUDEDEF=inca.def" before the 5th line in run.def |
---|
| 387 | sed -i '5iINCLUDEDEF=inca.def' run.def |
---|
[1650] | 388 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
---|
[2101] | 389 | echo "Activate coupling to REPROBUS: set type_trac=repr and add INCLUDEDEF=reprobus.def in run.def" |
---|
[1667] | 390 | LMDZ_sed run.def type_trac repr |
---|
[1779] | 391 | LMDZ_sed run.def config_inca none |
---|
[2101] | 392 | # Add "INCLUDEDEF=reprobus.def" before the 5th line in run.def |
---|
| 393 | sed -i '5iINCLUDEDEF=reprobus.def' run.def |
---|
[1650] | 394 | else |
---|
| 395 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
---|
[1667] | 396 | LMDZ_sed run.def type_trac lmdz |
---|
[1779] | 397 | LMDZ_sed run.def config_inca none |
---|
[1650] | 398 | fi |
---|
| 399 | |
---|
| 400 | |
---|
[2015] | 401 | # config.def : Activate direct radiative effect if ok_ade=y |
---|
| 402 | if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then |
---|
| 403 | LMDZ_sed config.def ok_ade ${lmdz_UserChoices_ok_ade} |
---|
| 404 | else |
---|
[1670] | 405 | LMDZ_sed config.def ok_ade n |
---|
[2015] | 406 | fi |
---|
| 407 | |
---|
| 408 | # config.def : Activate indirect radiative effect if ok_aie=y |
---|
| 409 | if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then |
---|
| 410 | LMDZ_sed config.def ok_aie ${lmdz_UserChoices_ok_aie} |
---|
| 411 | else |
---|
[1670] | 412 | LMDZ_sed config.def ok_aie n |
---|
[2015] | 413 | fi |
---|
[1816] | 414 | |
---|
[2015] | 415 | # config.def : Activate online aerosol coupled model if aerosol_couple=y |
---|
| 416 | if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then |
---|
| 417 | LMDZ_sed config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple} |
---|
[1670] | 418 | else |
---|
[1816] | 419 | LMDZ_sed config.def aerosol_couple n |
---|
[2015] | 420 | fi |
---|
[1670] | 421 | |
---|
[2015] | 422 | # config.def : Activate reading of ozone in climatology if read_climoz=2 |
---|
| 423 | if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then |
---|
| 424 | LMDZ_sed config.def read_climoz ${lmdz_UserChoices_read_climoz} |
---|
| 425 | else |
---|
| 426 | LMDZ_sed config.def read_climoz 0 |
---|
| 427 | fi |
---|
| 428 | |
---|
| 429 | # config.def : Choose aerosol use in radiative effect |
---|
| 430 | # type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only |
---|
| 431 | # =5 => dust only =6 => all aerosol |
---|
| 432 | if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then |
---|
| 433 | LMDZ_sed config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol} |
---|
| 434 | else |
---|
| 435 | LMDZ_sed config.def flag_aerosol 0 |
---|
| 436 | fi |
---|
| 437 | |
---|
| 438 | # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y |
---|
| 439 | if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then |
---|
| 440 | LMDZ_sed config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc} |
---|
| 441 | else |
---|
| 442 | LMDZ_sed config.def ok_cdnc n |
---|
| 443 | fi |
---|
| 444 | |
---|
[1690] | 445 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
---|
[2101] | 446 | if [ X${lmdz_UserChoices_ok_guide} = Xy ] ; then |
---|
| 447 | # Set ok_guide=y in guide.def |
---|
[1643] | 448 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
---|
[2101] | 449 | # Add "INCLUDEDEF=guide.def" before the 5th line in run.def |
---|
| 450 | sed -i '5iINCLUDEDEF=guide.def' run.def |
---|
[1690] | 451 | else |
---|
| 452 | LMDZ_sed guide.def ok_guide n |
---|
[1643] | 453 | fi |
---|
| 454 | |
---|
[902] | 455 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
---|
[1172] | 456 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
---|
[1688] | 457 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
---|
[396] | 458 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
---|
| 459 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 460 | echo |
---|
| 461 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
---|
| 462 | echo |
---|
| 463 | cat gcm.def |
---|
| 464 | ByPass_hgardfou_teta=n |
---|
[902] | 465 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
---|
[396] | 466 | fi |
---|
| 467 | |
---|
[902] | 468 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
---|
[1172] | 469 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
---|
[1688] | 470 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
---|
[396] | 471 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
---|
| 472 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 473 | echo |
---|
| 474 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
---|
| 475 | echo |
---|
| 476 | cat gcm.def |
---|
| 477 | ByPass_hgardfou_mats=n |
---|
[902] | 478 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
---|
[396] | 479 | fi |
---|
| 480 | |
---|
| 481 | if ( ${FirstInitialize} ) ; then |
---|
[1643] | 482 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
---|
| 483 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
---|
| 484 | echo "Restart files for LMDZ have been copied from a previous run" |
---|
[1778] | 485 | elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
---|
[1649] | 486 | # Do nothing because it is the program for creating restart files that is running and not LMDZ |
---|
| 487 | echo "create_etat0_limit.e will create initial start files" |
---|
[1643] | 488 | else |
---|
| 489 | # Restart files have to be created |
---|
| 490 | echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
---|
[396] | 491 | if [ ${DRYRUN} -le 2 ] ; then |
---|
[894] | 492 | ##-- suppression of ozone file construction -- |
---|
[1643] | 493 | cp config.def config.def.save |
---|
| 494 | LMDZ_sed config.def read_climoz 0 |
---|
[396] | 495 | IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/. |
---|
| 496 | if [ ${DRYRUN} -le 1 ] ; then |
---|
[908] | 497 | ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e |
---|
[1643] | 498 | IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc |
---|
| 499 | IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc |
---|
[396] | 500 | fi |
---|
[1643] | 501 | IGCM_sys_Mv config.def.save config.def |
---|
[396] | 502 | else |
---|
[908] | 503 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated" |
---|
| 504 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack |
---|
[396] | 505 | fi |
---|
| 506 | fi |
---|
| 507 | fi |
---|
| 508 | |
---|
| 509 | IGCM_debug_PopStack "ATM_Update" |
---|
| 510 | } |
---|
| 511 | |
---|
| 512 | #----------------------------------- |
---|
| 513 | function ATM_Finalize |
---|
| 514 | { |
---|
| 515 | IGCM_debug_PushStack "ATM_Finalize" |
---|
| 516 | |
---|
[1897] | 517 | # If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation. |
---|
[1892] | 518 | # Copy also the same file into ATM/Restart at ARCHIVE directory for backup. |
---|
[1897] | 519 | if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then |
---|
| 520 | if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then |
---|
| 521 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
| 522 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
| 523 | elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
---|
| 524 | # Special case : first period and no adjust => Save bands file with suffix _0 |
---|
| 525 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
| 526 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
| 527 | fi |
---|
[1892] | 528 | fi |
---|
[396] | 529 | |
---|
[1537] | 530 | # Add special treatement for CARBON CYCLE |
---|
[1546] | 531 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
---|
[1780] | 532 | ATM_Carbon_Finalize |
---|
| 533 | fi |
---|
[1537] | 534 | |
---|
[1780] | 535 | echo FINALIZE ATM ! |
---|
[1537] | 536 | |
---|
[1780] | 537 | IGCM_debug_PopStack "ATM_Finalize" |
---|
| 538 | } |
---|
[1537] | 539 | |
---|
| 540 | |
---|
| 541 | |
---|
[1780] | 542 | function ATM_Carbon_Update |
---|
| 543 | { |
---|
| 544 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
[1537] | 545 | |
---|
[1780] | 546 | IGCM_debug_PushStack "ATM_Carbon_Update" |
---|
| 547 | |
---|
| 548 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
---|
| 549 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 550 | typeset PathCO2log |
---|
| 551 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
---|
| 552 | |
---|
| 553 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
---|
| 554 | ##--Initialization of fluxes to an undefined value at the first run |
---|
| 555 | UndefinedValueCo2=-9999 |
---|
| 556 | InitPeriodCo2=0 |
---|
| 557 | InitDateBeginCo2=${UndefinedValueCo2} |
---|
| 558 | InitYearCo2=$(( ${year} - 1 )) |
---|
| 559 | InitDateEndCo2=${InitYearCo2}1231 |
---|
| 560 | fCO2_ff=${UndefinedValueCo2} |
---|
| 561 | CO2SBG=${UndefinedValueCo2} |
---|
| 562 | CO2LU=${UndefinedValueCo2} |
---|
| 563 | CO2MBG=${UndefinedValueCo2} |
---|
| 564 | CO2_ppm_prec=${UndefinedValueCo2} |
---|
| 565 | # Get the initial value of atmosp. pco2 |
---|
| 566 | CO2_ppm=${lmdz_UserChoices_co2_init} |
---|
| 567 | |
---|
| 568 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 569 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 570 | |
---|
[1537] | 571 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
[1780] | 572 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
[1537] | 573 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
[1780] | 574 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 575 | |
---|
| 576 | # Get the path where the log file co2.log is |
---|
| 577 | PathCO2log=${SUBMIT_DIR} |
---|
| 578 | # Get Previous line in co2.log |
---|
| 579 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 580 | |
---|
| 581 | else |
---|
| 582 | |
---|
| 583 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
---|
| 584 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
---|
| 585 | #SubmitRestartPath= |
---|
| 586 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
---|
| 587 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
---|
| 588 | PathCO2log=${config_ATM_SubmitRestartPath} |
---|
| 589 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
---|
| 590 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
---|
| 591 | |
---|
| 592 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 593 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 594 | |
---|
| 595 | # Save Last Line of control in new co2.log file |
---|
| 596 | InitPeriodCo2=0 |
---|
| 597 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
---|
| 598 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
---|
| 599 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
---|
| 600 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
---|
| 601 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
---|
| 602 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
---|
| 603 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
---|
| 604 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 605 | |
---|
| 606 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 607 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 608 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 609 | else |
---|
| 610 | # Get restart line in co2.log |
---|
| 611 | PathCO2log=${SUBMIT_DIR} |
---|
| 612 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 613 | # Get the value of atmosp. pco2 in co2.log |
---|
| 614 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 615 | fi |
---|
| 616 | |
---|
[1537] | 617 | fi |
---|
[1780] | 618 | |
---|
| 619 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
---|
| 620 | # Modify co2_ppm in config.def only for historical run |
---|
| 621 | # If not historical run, keep co2_ppm value set earlier by LMDZ_sed |
---|
| 622 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
---|
| 623 | fi |
---|
| 624 | IGCM_debug_PopStack "ATM_Carbon_Update" |
---|
| 625 | } |
---|
[1537] | 626 | |
---|
[396] | 627 | |
---|
[1780] | 628 | function ATM_Carbon_Finalize |
---|
| 629 | { |
---|
| 630 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
| 631 | |
---|
| 632 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
---|
| 633 | |
---|
| 634 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 635 | |
---|
| 636 | # Fossil fuel emission |
---|
| 637 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
---|
| 638 | # For Control, no fossil fuel emission : |
---|
| 639 | fCO2_ff=0 |
---|
| 640 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
---|
| 641 | else |
---|
| 642 | # For historical, get the fossile fuel file : |
---|
| 643 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
---|
| 644 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
---|
| 645 | fi |
---|
| 646 | |
---|
| 647 | # Get the value of ocean carbon flux |
---|
| 648 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
---|
| 649 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
---|
| 650 | echo "Ocean carbon flux :" ${CO2MBG} |
---|
| 651 | |
---|
| 652 | # Get the value of land fluxes |
---|
| 653 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
---|
| 654 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
---|
| 655 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
---|
| 656 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
---|
| 657 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
| 658 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
| 659 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
---|
| 660 | |
---|
| 661 | # Previous CO2 |
---|
| 662 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 663 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
| 664 | |
---|
| 665 | # Formula |
---|
| 666 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
| 667 | echo "New CO2 :" ${CO2_ppm} |
---|
| 668 | |
---|
| 669 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 670 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 671 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 672 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 673 | |
---|
| 674 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
[396] | 675 | } |
---|