[396] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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[894] | 3 | function LMDZ_sed |
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| 4 | { |
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| 5 | IGCM_debug_PushStack "LMDZ_sed" |
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| 6 | |
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[911] | 7 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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[894] | 8 | RET=$? |
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| 9 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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| 10 | \mv ${1}.tmp ${1} |
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| 11 | |
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| 12 | IGCM_debug_PopStack "LMDZ_sed" |
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| 13 | return $RET |
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| 14 | } |
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| 15 | |
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[396] | 16 | function ATM_Initialize |
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| 17 | { |
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| 18 | IGCM_debug_PushStack "ATM_Initialize" |
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| 19 | |
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[671] | 20 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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[396] | 21 | |
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[659] | 22 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19 |
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[396] | 23 | |
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[659] | 24 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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[649] | 25 | |
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[697] | 26 | ##-- Calendar type for LMDZ |
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| 27 | case ${config_UserChoices_CalendarType} in |
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| 28 | leap|gregorian) |
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| 29 | CalendarTypeForLmdz=earth_366d;; |
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| 30 | noleap) |
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| 31 | CalendarTypeForLmdz=earth_365d;; |
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| 32 | 360d) |
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| 33 | CalendarTypeForLmdz=earth_360d;; |
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| 34 | *) |
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| 35 | CalendarTypeForLmdz=earth_360d |
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| 36 | esac |
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| 37 | |
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[1541] | 38 | ##- LMDZ physics version |
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| 39 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 40 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 41 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 42 | else |
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| 43 | LMDZ_Physics=AP |
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| 44 | fi |
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| 45 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 46 | |
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[1643] | 47 | ##- Create_etat0_limit version |
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| 48 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 49 | CREATE=${lmdz_UserChoices_CREATE} |
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| 50 | echo create_etat0_limit version : ${CREATE} |
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| 51 | |
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[1550] | 52 | ## - LMDZ choice of config.def file |
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| 53 | ## ConfType must be set in lmdz.card |
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| 54 | ConfType=${lmdz_UserChoices_ConfType} |
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[1541] | 55 | |
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[1550] | 56 | ##- LMDZ output level, to be set in lmdz.card |
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| 57 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 58 | # OutLevel is not set. Take default value low. |
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| 59 | OutLevel=low |
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| 60 | else |
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| 61 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 62 | fi |
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| 63 | |
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[1539] | 64 | ##-- Output frequency purpose .... |
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[396] | 65 | ##-- Initialisation .... |
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[1539] | 66 | ok_mensuel=n |
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| 67 | ok_journe=n |
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[396] | 68 | ok_hf=n |
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[1539] | 69 | ok_hf3h=n |
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| 70 | ok_hf3hm=n |
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| 71 | ok_stn=n |
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[396] | 72 | |
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| 73 | case ${config_UserChoices_PeriodLength} in |
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[1539] | 74 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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| 75 | 5D|5d|1D|1d) ok_journe=y ;; |
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[396] | 76 | esac |
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| 77 | |
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| 78 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 79 | case ${frequency} in |
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[1539] | 80 | 1M|1m) ok_mensuel=y ;; |
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[396] | 81 | esac |
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| 82 | case ${frequency} in |
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[1539] | 83 | 5D|5d|1D|1d) ok_journe=y ;; |
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| 84 | esac |
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| 85 | case ${frequency} in |
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[396] | 86 | HF|hf) ok_hf=y ;; |
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| 87 | esac |
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[1539] | 88 | case ${frequency} in |
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| 89 | HF3h|hf3h) ok_hf3h=y ;; |
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| 90 | esac |
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| 91 | case ${frequency} in |
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| 92 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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| 93 | esac |
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| 94 | case ${frequency} in |
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| 95 | STN|stn) ok_stn=y ;; |
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| 96 | esac |
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[396] | 97 | done |
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| 98 | |
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[902] | 99 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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| 100 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_NbPeriod_adjust |
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[1172] | 101 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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[396] | 102 | |
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[815] | 103 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[902] | 104 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_Bands_file_name |
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[1172] | 105 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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[815] | 106 | fi |
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| 107 | |
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[912] | 108 | ## Read LMDZ_Freq_aero and LMDZ_Length_aero in lmdz.card |
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[1172] | 109 | LMDZ_Freq_aero=${lmdz_UserChoices_LMDZ_Freq_aero} |
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| 110 | LMDZ_Length_aero=${lmdz_UserChoices_LMDZ_Length_aero} |
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[912] | 111 | |
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[1000] | 112 | ## Read LMDZ_COSP_monthly LMDZ_COSP_daily and LMDZ_COSP_hf in lmdz.card |
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[1172] | 113 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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| 114 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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| 115 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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| 116 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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[1000] | 117 | |
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[1003] | 118 | ## Read LMDZ_NMC_monthly LMDZ_NMC_daily and LMDZ_NMC_hf in lmdz.card |
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[1172] | 119 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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| 120 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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| 121 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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[1000] | 122 | |
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[396] | 123 | IGCM_debug_PopStack "ATM_Initialize" |
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| 124 | } |
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| 125 | |
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| 126 | #----------------------------------------------------------------- |
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| 127 | function ATM_Update |
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| 128 | { |
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| 129 | IGCM_debug_PushStack "ATM_Update" |
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| 130 | |
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[1537] | 131 | |
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[749] | 132 | case ${config_UserChoices_PeriodLength} in |
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| 133 | *Y|*y) |
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| 134 | LMDZ_ecrit_ISCCP=30. |
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| 135 | LMDZ_periodav=30. |
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[755] | 136 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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[749] | 137 | echo Change calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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| 138 | exit |
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| 139 | fi |
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| 140 | ;; |
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| 141 | *) |
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| 142 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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| 143 | LMDZ_periodav=${PeriodLengthInDays}. |
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| 144 | ;; |
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| 145 | esac |
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[1546] | 146 | |
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[396] | 147 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 148 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 149 | RAZ_DATE=1 |
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| 150 | else |
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| 151 | RAZ_DATE=0 |
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| 152 | fi |
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| 153 | |
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[815] | 154 | ## algo : For CumulPeriod=1 ; |
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| 155 | ## IF NbPeriod_Adjust = 0, Get Bands file directly from server, store it with _0 suffix |
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| 156 | ## ELSE LMDZ_adjust=y ; save Bands file on file server ; |
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| 157 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; Get Bands file from server (CumulPeriod-1) ; LMDZ_adjust=y ; save Bands file on file server ; |
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| 158 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from server (CumulPeriod=LMDZ_NbPeriod_adjust 0 to force it) ; Use Bands ; |
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| 159 | |
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| 160 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 161 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1620] | 162 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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[815] | 163 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
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[1620] | 164 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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[815] | 165 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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| 166 | fi |
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| 167 | fi |
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| 168 | |
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[743] | 169 | LMDZ_adjust=n |
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| 170 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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| 171 | |
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[815] | 172 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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| 173 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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[743] | 174 | |
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[902] | 175 | [ ${CumulPeriod} -gt 1 ] && ( IGCM_sys_Get ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ; IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ) |
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[743] | 176 | |
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[1535] | 177 | ##-- GHG forcing : |
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[1546] | 178 | ## If forcing file exist in run directory, read values for the current year and modify config.def |
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[1535] | 179 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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| 180 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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[1546] | 181 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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[1535] | 182 | fi |
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| 183 | if [ -f CO2.txt ] ; then |
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| 184 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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[1546] | 185 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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[1535] | 186 | fi |
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| 187 | if [ -f CH4.txt ] ; then |
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| 188 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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[1546] | 189 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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[1535] | 190 | fi |
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| 191 | if [ -f N2O.txt ] ; then |
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| 192 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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[1546] | 193 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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[1535] | 194 | fi |
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| 195 | if [ -f CFC11.txt ] ; then |
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| 196 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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[1546] | 197 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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[1535] | 198 | fi |
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| 199 | if [ -f CFC12.txt ] ; then |
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| 200 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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[1546] | 201 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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[1535] | 202 | fi |
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| 203 | |
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[1537] | 204 | # Add special treatement for CARBON CYCLE |
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[1546] | 205 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1537] | 206 | |
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| 207 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
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| 208 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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| 209 | typeset PathCO2log |
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| 210 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
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| 211 | |
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| 212 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ]) ; then |
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| 213 | ##--Initialization of fluxes to an undefined value at the first run |
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| 214 | UndefinedValueCo2=-9999 |
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| 215 | InitPeriodCo2=0 |
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| 216 | InitDateBeginCo2=${UndefinedValueCo2} |
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| 217 | InitYearCo2=$(( ${year} - 1 )) |
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| 218 | InitDateEndCo2=${InitYearCo2}1231 |
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| 219 | fCO2_ff=${UndefinedValueCo2} |
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| 220 | CO2SBG=${UndefinedValueCo2} |
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| 221 | CO2LU=${UndefinedValueCo2} |
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| 222 | CO2MBG=${UndefinedValueCo2} |
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| 223 | CO2_ppm_prec=${UndefinedValueCo2} |
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| 224 | # Get the initial value of atmosp. pco2 |
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| 225 | CO2_ppm=${lmdz_UserChoices_co2_init} |
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| 226 | |
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| 227 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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| 228 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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| 229 | |
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| 230 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
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| 231 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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| 232 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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| 233 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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| 234 | |
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| 235 | # Get the path where the log file co2.log is |
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| 236 | PathCO2log=${SUBMIT_DIR} |
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| 237 | # Get Previous line in co2.log |
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| 238 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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| 239 | |
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| 240 | else |
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| 241 | |
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| 242 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
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| 243 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
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| 244 | #SubmitRestartPath= |
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| 245 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ]) ; then |
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| 246 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
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| 247 | PathCO2log=${config_ATM_SubmitRestartPath} |
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| 248 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
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| 249 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
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| 250 | |
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| 251 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
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| 252 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
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| 253 | |
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| 254 | # Save Last Line of control in new co2.log file |
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| 255 | InitPeriodCo2=0 |
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| 256 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
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| 257 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
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| 258 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
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| 259 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
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| 260 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
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| 261 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
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| 262 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
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| 263 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 264 | |
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| 265 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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| 266 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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| 267 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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| 268 | else |
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| 269 | # Get restart line in co2.log |
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| 270 | PathCO2log=${SUBMIT_DIR} |
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| 271 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
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| 272 | # Get the value of atmosp. pco2 in co2.log |
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| 273 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 274 | fi |
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| 275 | |
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| 276 | fi |
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| 277 | |
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| 278 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
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[1546] | 279 | # Modify co2_ppm in config.def only for historical run |
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| 280 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
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[1537] | 281 | fi |
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| 282 | fi |
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| 283 | # end CARBON_CYCLE |
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| 284 | |
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[1538] | 285 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 286 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 287 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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| 288 | LMDZ_COSP_daily=y |
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| 289 | fi |
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[1537] | 290 | |
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[1538] | 291 | |
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[1540] | 292 | ## output.def parameters |
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[1546] | 293 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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[1539] | 294 | # histmth histday histhf histfh3h histhf3hm histstn |
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[1546] | 295 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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[1540] | 296 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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| 297 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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| 298 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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| 299 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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| 300 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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| 301 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly}, ${LMDZ_NMC_daily}, ${LMDZ_NMC_hf}" |
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[396] | 302 | |
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[1544] | 303 | ## gcm.def parameters : |
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| 304 | # Modification only for new physics |
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| 305 | if [ X${LMDZ_Physics} = X"NPv3.0" ] ; then |
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| 306 | LMDZ_sed gcm.def iphysiq 5 |
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| 307 | fi |
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[396] | 308 | |
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[1544] | 309 | |
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[911] | 310 | ## run.def parameters |
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| 311 | LMDZ_sed run.def dayref ${InitDay} |
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| 312 | LMDZ_sed run.def anneeref ${InitYear} |
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| 313 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
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| 314 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
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| 315 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
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| 316 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
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| 317 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
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[396] | 318 | |
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[1643] | 319 | |
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| 320 | # guide.def : Activate nudging if ok_guide set in lmdz.card |
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| 321 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
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| 322 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
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| 323 | fi |
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| 324 | |
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[902] | 325 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
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| 326 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta |
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[1172] | 327 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
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[396] | 328 | if [ ${ByPass_hgardfou_teta} = y ] ; then |
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| 329 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
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| 330 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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| 331 | echo |
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| 332 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
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| 333 | echo |
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| 334 | cat gcm.def |
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| 335 | ByPass_hgardfou_teta=n |
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[902] | 336 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
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[396] | 337 | fi |
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| 338 | |
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[902] | 339 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
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| 340 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats |
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[1172] | 341 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
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[396] | 342 | if [ ${ByPass_hgardfou_mats} = y ] ; then |
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| 343 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
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| 344 | IGCM_sys_Mv gcm.def.tmp gcm.def |
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| 345 | echo |
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| 346 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
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| 347 | echo |
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| 348 | cat gcm.def |
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| 349 | ByPass_hgardfou_mats=n |
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[902] | 350 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
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[396] | 351 | fi |
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| 352 | |
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| 353 | if ( ${FirstInitialize} ) ; then |
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[1643] | 354 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
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| 355 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
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| 356 | echo "Restart files for LMDZ have been copied from a previous run" |
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| 357 | else |
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| 358 | # Restart files have to be created |
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| 359 | echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
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[396] | 360 | if [ ${DRYRUN} -le 2 ] ; then |
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[894] | 361 | ##-- suppression of ozone file construction -- |
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[1643] | 362 | cp config.def config.def.save |
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| 363 | LMDZ_sed config.def read_climoz 0 |
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[396] | 364 | IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/. |
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| 365 | if [ ${DRYRUN} -le 1 ] ; then |
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[908] | 366 | ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e |
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[1643] | 367 | IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc |
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| 368 | IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc |
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[396] | 369 | fi |
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[1643] | 370 | IGCM_sys_Mv config.def.save config.def |
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[396] | 371 | else |
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[908] | 372 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated" |
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| 373 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack |
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[396] | 374 | fi |
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| 375 | fi |
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| 376 | fi |
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| 377 | |
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| 378 | IGCM_debug_PopStack "ATM_Update" |
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| 379 | } |
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| 380 | |
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| 381 | #----------------------------------- |
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| 382 | function ATM_Finalize |
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| 383 | { |
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| 384 | IGCM_debug_PushStack "ATM_Finalize" |
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| 385 | |
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[743] | 386 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
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[396] | 387 | |
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[1537] | 388 | |
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| 389 | # Add special treatement for CARBON CYCLE |
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[1546] | 390 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1537] | 391 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
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| 392 | |
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| 393 | # Fossil fuel emission |
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| 394 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
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| 395 | # For Control, no fossil fuel emission : |
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| 396 | fCO2_ff=0 |
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| 397 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
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| 398 | else |
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| 399 | # For historical, get the fossile fuel file : |
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| 400 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
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| 401 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
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| 402 | fi |
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| 403 | |
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| 404 | # Get the value of ocean carbon flux |
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| 405 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
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| 406 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
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| 407 | echo "Ocean carbon flux :" ${CO2MBG} |
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| 408 | |
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| 409 | # Get the value of land fluxes |
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| 410 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
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| 411 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
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| 412 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
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| 413 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
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| 414 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
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| 415 | echo "LU flux (FLUC) :" ${CO2LU} |
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| 416 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
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| 417 | |
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| 418 | # Previous CO2 |
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| 419 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
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| 420 | echo "Previous CO2 :" ${CO2_ppm_prec} |
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| 421 | |
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| 422 | # Formula |
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| 423 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
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| 424 | echo "New CO2 :" ${CO2_ppm} |
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| 425 | |
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| 426 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
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| 427 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
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| 428 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
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| 429 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
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| 430 | |
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| 431 | fi |
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| 432 | |
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[396] | 433 | echo FINALIZE ATM ! |
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| 434 | |
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| 435 | IGCM_debug_PopStack "ATM_Finalize" |
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| 436 | } |
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