1 | slurmstepd-irene8002: error: task/cgroup: task[0] unable to set taskset '0x0' |
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2 | + SCRIPT_PID=178220 |
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3 | + /bin/ksh -x /tmp/jobstart.178180 |
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4 | + set +x |
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5 | Wed Mar 20 11:16:19 CET 2019 |
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6 | |
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7 | ==================================================== |
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8 | Where do we run ? irene8002 |
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9 | Linux irene8002 3.10.0-693.43.1.el7.x86_64 #1 SMP Thu Oct 11 14:14:26 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux |
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10 | ==================================================== |
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11 | |
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12 | Source machine dependent settings for irene Intel X-64 at TGCC |
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13 | 2019-03-20 11:16:21 --Debug1--> List of loaded modules: |
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14 | Currently Loaded Modulefiles: |
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15 | 1) ccc/1.0(default) 24) nco/4.6.0(default) |
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16 | 2) datadir/gencmip6 25) cdo/1.7.2rc6(default) |
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17 | 3) dfldatadir/gencmip6 26) ghostscript/9.19(default) |
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18 | 4) feature/mkl/lp64 27) ferret/7.2(default) |
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19 | 5) feature/mkl/sequential |
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20 | 6) mkl/17.0.6.256(default) |
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21 | 7) licsrv/intel |
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22 | 8) c/intel/17.0.6.256(default) |
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23 | 9) c++/intel/17.0.6.256(default) |
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24 | 10) fortran/intel/17.0.6.256(default) |
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25 | 11) flavor/buildcompiler/intel/17(default) |
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26 | 12) intel/17.0.6.256(default) |
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27 | 13) hwloc/1.11.3(default) |
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28 | 14) flavor/buildmpi/openmpi/2.0 |
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29 | 15) feature/openmpi/net/auto(default) |
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30 | 16) .tuning/openmpi/2.0.4 |
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31 | 17) feature/openmpi/mpi_compiler/intel(default) |
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32 | 18) mpi/openmpi/2.0.4(default) |
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33 | 19) flavor/hdf5/parallel |
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34 | 20) netcdf-c/4.6.0(default) |
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35 | 21) netcdf-fortran/4.4.4(default) |
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36 | 22) hdf5/1.8.20(default) |
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37 | 23) feature/bridge/heterogenous_mpmd |
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38 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220 |
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39 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220 |
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40 | |
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41 | 2019-03-20 11:16:22 --Debug1--> IGCM_config_CommonConfiguration |
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42 | 2019-03-20 11:16:22 --Debug1--> /ccc/cont003/home/gencmip6/devillim/modipsl_v20fev/config/IPSLCM6/CM61-LR-scen-ssp245-r10/POST_REDO/config.card |
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43 | |
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44 | 2019-03-20 11:16:22 --Debug1--> DefineArrayFromOption : config_UserChoices |
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45 | 2019-03-20 11:16:22 --------------Debug3--> JobName : CM61-LR-scen-ssp245-r10 |
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46 | 2019-03-20 11:16:22 --------------Debug3--> ExperimentName : ssp245 |
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47 | 2019-03-20 11:16:22 --------------Debug3--> SpaceName : PROD |
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48 | 2019-03-20 11:16:22 --------------Debug3--> LongName : IPSLCM6.1.8-LR |
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49 | 2019-03-20 11:16:22 --------------Debug3--> TagName : IPSLCM6 |
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50 | 2019-03-20 11:16:22 --------------Debug3--> ModelName : IPSL-CM6A-LR |
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51 | 2019-03-20 11:16:22 --------------Debug3--> Member : r10i1p1f1 |
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52 | 2019-03-20 11:16:22 --------------Debug3--> ExpType : IPSLCM/scenario_CMIP6 |
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53 | 2019-03-20 11:16:22 --------------Debug3--> CalendarType : leap |
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54 | 2019-03-20 11:16:22 --------------Debug3--> DateBegin : 2015-01-01 |
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55 | 2019-03-20 11:16:22 --------------Debug3--> DateEnd : 2099-12-31 |
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56 | 2019-03-20 11:16:22 --------------Debug3--> ORCA_version : eORCA1.2 |
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57 | 2019-03-20 11:16:22 --------------Debug3--> PeriodLength : 1Y |
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58 | |
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59 | 2019-03-20 11:16:22 --Debug1--> DefineArrayFromOption : config_Ensemble |
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60 | |
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61 | 2019-03-20 11:16:22 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/cont003/home/gencmip6/devillim/modipsl_v20fev/config/IPSLCM6/CM61-LR-scen-ssp245-r10/POST_REDO/config.card. |
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62 | 2019-03-20 11:16:22 --Debug1--> Warning: Section Ensemble not found |
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63 | |
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64 | 2019-03-20 11:16:22 --Debug1--> DefineArrayFromOption : config_Post |
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65 | 2019-03-20 11:16:22 --------------Debug3--> ParserXIOS : FALSE |
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66 | 2019-03-20 11:16:22 --------------Debug3--> RebuildFrequency : NONE |
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67 | 2019-03-20 11:16:22 --------------Debug3--> PackFrequency : 5Y |
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68 | 2019-03-20 11:16:22 --------------Debug3--> LightRestartPack : FALSE |
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69 | 2019-03-20 11:16:22 --------------Debug3--> TimeSeriesFrequency : 5Y |
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70 | 2019-03-20 11:16:22 --------------Debug3--> SeasonalFrequency : 5Y |
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71 | 2019-03-20 11:16:22 --------------Debug3--> MetricsPCMDI : FALSE |
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72 | 2019-03-20 11:16:22 --------------Debug3--> SeasonalFrequencyOffset : 0 |
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73 | |
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74 | unload module dfldatadir/gencmip6 (Data Directory) |
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75 | unload module datadir/gencmip6 (Data Directory) |
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76 | load module datadir/gencmip6 (Data Directory) |
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77 | load module dfldatadir/gencmip6 (Data Directory) |
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78 | 2019-03-20 11:16:22 --Debug1--> Load dfldatadir for forced gencmip6 project |
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79 | 2019-03-20 11:16:22 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/devillim/IGCM_OUT |
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80 | 2019-03-20 11:16:22 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT |
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81 | 2019-03-20 11:16:22 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/devillim/IGCM_OUT |
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82 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/REBUILD |
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83 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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84 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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85 | IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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86 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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87 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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88 | IGCM_sys_Get : /l liste_file[*] /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220/OCE |
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89 | IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,thetao CM61-LR-scen-ssp245-r10_20150101_20941231_1M_thetao.nc CM61-LR-scen-ssp245-r10_20950101_20991231_1M_grid_T.nc CM61-LR-scen-ssp245-r10_20150101_20991231_1M_thetao.nc |
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90 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r10_20150101_20941231_1M_thetao.nc |
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91 | IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r10_20150101_20991231_1M_thetao.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r10_20150101_20991231_1M_thetao.nc |
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92 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO |
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93 | IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r10_20150101_20991231_1M_thetao.nc |
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94 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r10_20150101_20991231_1M_thetao.nc |
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95 | IGCM_sys_ncrcat : --hst -v nav_lon,nav_lat,olevel,time_counter,time_centered,time_centered_bounds,so CM61-LR-scen-ssp245-r10_20150101_20941231_1M_so.nc CM61-LR-scen-ssp245-r10_20950101_20991231_1M_grid_T.nc CM61-LR-scen-ssp245-r10_20150101_20991231_1M_so.nc |
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96 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r10_20150101_20941231_1M_so.nc |
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97 | IGCM_sys_Put_Out : CM61-LR-scen-ssp245-r10_20150101_20991231_1M_so.nc /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r10_20150101_20991231_1M_so.nc |
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98 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO |
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99 | IGCM_sys_Chmod : 444 /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO/CM61-LR-scen-ssp245-r10_20150101_20991231_1M_so.nc |
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100 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r10_20150101_20991231_1M_so.nc |
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101 | IGCM_sys_Rm : CM61-LR-scen-ssp245-r10_20950101_20991231_1M_grid_T.nc |
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102 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_YE |
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103 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO |
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104 | IGCM_sys_Put_Dods : OCE/Analyse/TS_MO |
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105 | IGCM_sys_Dods_Rm : OCE/Analyse/TS_MO |
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106 | /ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO |
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107 | IGCM_sys_Dods_Cp : OCE/Analyse/TS_MO |
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108 | - store : /ccc/store/cont003/thredds/devillim/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO == IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_MO |
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109 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_DA |
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110 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_HF |
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111 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/devillim/IGCM_OUT/IPSLCM6/PROD/ssp245/CM61-LR-scen-ssp245-r10/OCE/Analyse/TS_INS |
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112 | IGCM_sys_RmRunDir : -Rf /ccc/scratch/cont003/gencmip6/devillim/RUN_DIR/1621169_178220 |
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113 | Wed Mar 20 11:41:14 CET 2019 |
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114 | ########## ########## ########## ########## ########## ########## ########## ########## |
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115 | Execution Sum Up |
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116 | ########## ########## ########## ########## ########## ########## ########## ########## |
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117 | Jobid : 1621169 |
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118 | Jobname : TS |
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119 | User : devillim |
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120 | Account : scecmip6@xlarge |
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121 | Limits : time = 22:14:00 , memory/task = 27000 Mo |
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122 | Date : submit = 20/03/2019 11:16:13 , start = 20/03/2019 11:16:15 , end = 21/03/2019 09:30:18 |
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123 | Execution : partition = xlarge , QoS = normal@xlarge , Comment = (null) |
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124 | Resources : ntasks = 1 , cpus/task = 8 , ncpus = 8 , nodes = 1 |
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125 | Nodes=irene8002 CPU_IDs=8-15 Mem=216000 GRES_IDX= |
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126 | |
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127 | Memory / step |
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128 | -------------- |
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129 | Resident Size (Mo) Virtual Size (Go) |
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130 | JobID Max (Node:Task) AveTask Max (Node:Task) AveTask |
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131 | ----------- ------------------------ ------- -------------------------- ------- |
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132 | |
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133 | Accounting / step |
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134 | ------------------ |
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135 | |
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136 | JobID JobName Ntasks Ncpus Nnodes Layout Elapsed User System Eff State |
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137 | ------------ ------------ ------ ----- ------ ------- ------- ------- ------ --- ----- |
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138 | 1621169 TS - 8 1 - 00:24:59 (100%) - - - - |
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139 | ########## ########## ########## ########## ########## ########## ########## ########## |
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