[5190] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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| 3 | function ATM_Initialize |
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| 4 | { |
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| 5 | IGCM_debug_PushStack "ATM_Initialize" |
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| 6 | |
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| 7 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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| 8 | |
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| 9 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39 |
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| 10 | |
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| 11 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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| 12 | RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' ) |
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| 13 | RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' ) |
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| 14 | RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}" |
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| 15 | |
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| 16 | ##- LMDZ physics version |
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| 17 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 18 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 19 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 20 | else |
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| 21 | LMDZ_Physics=AP |
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| 22 | fi |
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| 23 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 24 | |
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| 25 | ##- Create_etat0_limit version |
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| 26 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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| 27 | ## This variable is only used in lmdz.card to choose input files. |
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| 28 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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| 29 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 30 | CREATE=${lmdz_UserChoices_CREATE} |
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| 31 | echo create_etat0_limit version : ${CREATE} |
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| 32 | fi |
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| 33 | |
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| 34 | |
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| 35 | ## - LMDZ choice of config.def file |
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| 36 | ## ConfType must be set in lmdz.card |
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| 37 | ConfType=${lmdz_UserChoices_ConfType} |
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| 38 | |
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| 39 | ##- LMDZ output level, to be set in lmdz.card |
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| 40 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 41 | # OutLevel is not set. Take default value low. |
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| 42 | OutLevel=low |
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| 43 | else |
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| 44 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 45 | fi |
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| 46 | |
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| 47 | ##-- Output frequency purpose .... |
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| 48 | ##-- Initialisation .... |
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| 49 | ok_mensuel=.FALSE. |
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| 50 | ok_journe=.FALSE. |
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| 51 | ok_hf=.FALSE. |
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| 52 | ok_hf3h=.FALSE. |
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| 53 | ok_hf3hm=.FALSE. |
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| 54 | ok_stn=.FALSE. |
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| 55 | |
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| 56 | |
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| 57 | case ${config_UserChoices_PeriodLength} in |
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| 58 | 1Y|1y|1M|1m) ok_mensuel=.TRUE. ;; |
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| 59 | 5D|5d|1D|1d) ok_journe=.TRUE. ;; |
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| 60 | esac |
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| 61 | |
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| 62 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 63 | case ${frequency} in |
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| 64 | 1M|1m) ok_mensuel=.TRUE. ;; |
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| 65 | esac |
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| 66 | case ${frequency} in |
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| 67 | 5D|5d|1D|1d) ok_journe=.TRUE. ;; |
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| 68 | esac |
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| 69 | case ${frequency} in |
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| 70 | HF|hf) ok_hf=.TRUE. ;; |
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| 71 | esac |
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| 72 | case ${frequency} in |
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| 73 | HF3h|hf3h) ok_hf3h=.TRUE. ;; |
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| 74 | esac |
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| 75 | case ${frequency} in |
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| 76 | HF3hm|hf3hm) ok_hf3hm=.TRUE. ;; |
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| 77 | esac |
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| 78 | case ${frequency} in |
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| 79 | STN|stn) ok_stn=.TRUE. ;; |
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| 80 | esac |
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| 81 | done |
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| 82 | |
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| 83 | |
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| 84 | ## Read LMDZ_COSP_OK in lmdz.card |
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| 85 | if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then |
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| 86 | ## LMDZ_COSP_OK=y, now read all other COSP variables |
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| 87 | ## Read LMDZ_COSP_monthly in lmdz.card |
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| 88 | if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then |
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| 89 | LMDZ_COSP_monthly=.TRUE. |
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| 90 | else |
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| 91 | LMDZ_COSP_monthly=.FALSE. |
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| 92 | fi |
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| 93 | ## Read LMDZ_COSP_daily in lmdz.card |
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| 94 | if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then |
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| 95 | LMDZ_COSP_daily=.TRUE. |
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| 96 | else |
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| 97 | LMDZ_COSP_daily=.FALSE. |
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| 98 | fi |
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| 99 | ## Read LMDZ_COSP_hf in lmdz.card |
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| 100 | if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then |
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| 101 | LMDZ_COSP_hf=.TRUE. |
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| 102 | else |
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| 103 | LMDZ_COSP_hf=.FALSE. |
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| 104 | fi |
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| 105 | else |
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| 106 | # LMDZ_COSP_OK=n : All cosp output are deactivated |
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| 107 | LMDZ_COSP_monthly=.FALSE. |
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| 108 | LMDZ_COSP_daily=.FALSE. |
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| 109 | LMDZ_COSP_hf=.FALSE. |
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| 110 | fi |
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| 111 | |
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| 112 | ## Read LMDZ_NMC_monthly in lmdz.card |
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| 113 | if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then |
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| 114 | LMDZ_NMC_monthly=.TRUE. |
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| 115 | else |
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| 116 | LMDZ_NMC_monthly=.FALSE. |
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| 117 | fi |
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| 118 | |
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| 119 | ## Read LMDZ_NMC_daily in lmdz.card |
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| 120 | if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then |
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| 121 | LMDZ_NMC_daily=.TRUE. |
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| 122 | else |
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| 123 | LMDZ_NMC_daily=.FALSE. |
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| 124 | fi |
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| 125 | |
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| 126 | ## Read LMDZ_NMC_hf in lmdz.card |
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| 127 | if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then |
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| 128 | LMDZ_NMC_hf=.TRUE. |
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| 129 | else |
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| 130 | LMDZ_NMC_hf=.FALSE. |
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| 131 | fi |
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| 132 | |
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| 133 | |
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| 134 | IGCM_debug_PopStack "ATM_Initialize" |
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| 135 | } |
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| 136 | |
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| 137 | #----------------------------------------------------------------- |
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| 138 | function ATM_Update |
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| 139 | { |
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| 140 | IGCM_debug_PushStack "ATM_Update" |
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| 141 | |
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| 142 | ##-- GHG forcing : |
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| 143 | ## If forcing file exist in run directory, read values for the current year |
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| 144 | ## and set in config.def. If not use the default value set in config.def |
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| 145 | |
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| 146 | # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file. |
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| 147 | IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)" |
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| 148 | IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file" |
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| 149 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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| 150 | value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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| 151 | if [ X"${value}" = X ] ; then |
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| 152 | # The grep returned empty variable, stop execution |
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| 153 | IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year." |
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| 154 | IGCM_debug_Verif_Exit |
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| 155 | fi |
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| 156 | else |
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| 157 | value=DEFAULT |
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| 158 | fi |
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| 159 | IGCM_comp_modifyDefFile nonblocker config.def solaire $value |
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| 160 | |
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| 161 | # Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file. |
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| 162 | if [ -f Eccentricity.txt ] ; then |
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| 163 | value=`grep Annee_${year} Eccentricity.txt | awk -F= '{print $2}'` |
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| 164 | if [ X"${value}" = X ] ; then |
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| 165 | # The grep returned empty variable, stop execution |
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| 166 | IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year." |
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| 167 | IGCM_debug_Verif_Exit |
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| 168 | fi |
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| 169 | else |
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| 170 | value=DEFAULT |
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| 171 | fi |
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| 172 | IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value |
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| 173 | |
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| 174 | # Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file. |
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| 175 | if [ -f Obliquity.txt ] ; then |
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| 176 | value=`grep Annee_${year} Obliquity.txt | awk -F= '{print $2}'` |
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| 177 | if [ X"${value}" = X ] ; then |
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| 178 | # The grep returned empty variable, stop execution |
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| 179 | IGCM_debug_Exit "The file Obliquity.txt do not contain the current year." |
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| 180 | IGCM_debug_Verif_Exit |
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| 181 | fi |
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| 182 | else |
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| 183 | value=DEFAULT |
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| 184 | fi |
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| 185 | IGCM_comp_modifyDefFile nonblocker config.def R_incl $value |
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| 186 | |
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| 187 | # Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file. |
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| 188 | if [ -f Perihelie.txt ] ; then |
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| 189 | value=`grep Annee_${year} Perihelie.txt | awk -F= '{print $2}'` |
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| 190 | if [ X"${value}" = X ] ; then |
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| 191 | # The grep returned empty variable, stop execution |
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| 192 | IGCM_debug_Exit "The file Perihelie.txt do not contain the current year." |
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| 193 | IGCM_debug_Verif_Exit |
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| 194 | fi |
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| 195 | else |
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| 196 | value=DEFAULT |
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| 197 | fi |
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| 198 | IGCM_comp_modifyDefFile nonblocker config.def R_peri $value |
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| 199 | |
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| 200 | # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file. |
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| 201 | # Calculate co2_ppm_per as co2_ppm*4. |
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| 202 | if [ -f CO2.txt ] ; then |
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| 203 | value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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| 204 | if [ X"${value}" = X ] ; then |
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| 205 | # The grep returned empty variable, stop execution |
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| 206 | IGCM_debug_Exit "The file CO2.txt do not contain the current year." |
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| 207 | IGCM_debug_Verif_Exit |
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| 208 | fi |
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| 209 | value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'` |
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| 210 | else |
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| 211 | value=DEFAULT |
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| 212 | value4=DEFAULT |
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| 213 | fi |
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| 214 | IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value |
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| 215 | IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4 |
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| 216 | |
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| 217 | |
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| 218 | # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file. |
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| 219 | if [ -f CH4.txt ] ; then |
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| 220 | value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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| 221 | if [ X"${value}" = X ] ; then |
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| 222 | # The grep returned empty variable, stop execution |
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| 223 | IGCM_debug_Exit "The file CH4.txt do not contain the current year." |
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| 224 | IGCM_debug_Verif_Exit |
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| 225 | fi |
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| 226 | else |
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| 227 | value=DEFAULT |
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| 228 | fi |
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| 229 | IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value |
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| 230 | |
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| 231 | |
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| 232 | # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file. |
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| 233 | if [ -f N2O.txt ] ; then |
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| 234 | value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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| 235 | if [ X"${value}" = X ] ; then |
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| 236 | # The grep returned empty variable, stop execution |
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| 237 | IGCM_debug_Exit "The file N2O.txt do not contain the current year." |
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| 238 | IGCM_debug_Verif_Exit |
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| 239 | fi |
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| 240 | else |
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| 241 | value=DEFAULT |
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| 242 | fi |
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| 243 | IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value |
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| 244 | |
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| 245 | # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file. |
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| 246 | if [ -f CFC11.txt ] ; then |
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| 247 | value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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| 248 | if [ X"${value}" = X ] ; then |
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| 249 | # The grep returned empty variable, stop execution |
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| 250 | IGCM_debug_Exit "The file CFC11.txt do not contain the current year." |
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| 251 | IGCM_debug_Verif_Exit |
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| 252 | fi |
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| 253 | else |
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| 254 | value=DEFAULT |
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| 255 | fi |
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| 256 | IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value |
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| 257 | |
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| 258 | |
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| 259 | # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file. |
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| 260 | if [ -f CFC12.txt ] ; then |
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| 261 | value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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| 262 | if [ X"${value}" = X ] ; then |
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| 263 | # The grep returned empty variable, stop execution |
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| 264 | IGCM_debug_Exit "The file CFC12.txt do not contain the current year." |
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| 265 | IGCM_debug_Verif_Exit |
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| 266 | fi |
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| 267 | else |
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| 268 | value=DEFAULT |
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| 269 | fi |
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| 270 | IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value |
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| 271 | |
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| 272 | |
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| 273 | ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400 |
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| 274 | LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400} |
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| 275 | IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl} |
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| 276 | IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl} |
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| 277 | |
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| 278 | ##-- Add special treatement for CARBON CYCLE |
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| 279 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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| 280 | ATM_Carbon_Update |
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| 281 | fi |
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| 282 | |
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| 283 | |
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| 284 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 285 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 286 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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| 287 | LMDZ_COSP_daily=.TRUE. |
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| 288 | fi |
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| 289 | |
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| 290 | ## Modifiy |
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| 291 | IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel} |
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| 292 | |
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| 293 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe} |
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| 294 | |
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| 295 | if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then |
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| 296 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2 |
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| 297 | else |
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| 298 | IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5 |
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| 299 | fi |
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| 300 | |
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| 301 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf} |
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| 302 | |
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| 303 | if [ X${OutLevel} = Xlow ] ; then |
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| 304 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5 |
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| 305 | elif [ X${OutLevel} = Xmedium ] ; then |
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| 306 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6 |
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| 307 | elif [ X${OutLevel} = Xhigh ] ; then |
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| 308 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7 |
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| 309 | fi |
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| 310 | |
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| 311 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h} |
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| 312 | IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm} |
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| 313 | |
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| 314 | IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn} |
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| 315 | |
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| 316 | IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly} |
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| 317 | IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily} |
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| 318 | IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf} |
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| 319 | |
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| 320 | IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly} |
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| 321 | IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily} |
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| 322 | IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf} |
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| 323 | |
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| 324 | # Activate the histstrataer output file only for configuration with interactive stratospheric aersols |
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| 325 | # done by setting the key word LMDZ_strataero=y in lmdz.card |
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| 326 | if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then |
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| 327 | IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE. |
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| 328 | else |
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| 329 | IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .FALSE. |
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| 330 | fi |
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| 331 | |
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| 332 | |
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| 333 | ## run.def parameters |
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| 334 | |
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| 335 | |
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| 336 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 337 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 338 | IGCM_comp_modifyDefFile blocker run.def raz_date 1 |
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| 339 | else |
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| 340 | IGCM_comp_modifyDefFile blocker run.def raz_date 0 |
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| 341 | fi |
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| 342 | |
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| 343 | ##-- Calendar type for LMDZ and create_etat0_limit |
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| 344 | case ${config_UserChoices_CalendarType} in |
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| 345 | leap|gregorian) |
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| 346 | IGCM_comp_modifyDefFile blocker run.def calend gregorian ;; |
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| 347 | noleap) |
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| 348 | IGCM_comp_modifyDefFile blocker run.def calend earth_365d ;; |
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| 349 | 360d) |
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| 350 | IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;; |
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| 351 | *) |
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| 352 | IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;; |
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| 353 | esac |
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| 354 | |
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| 355 | IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay} |
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| 356 | IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays} |
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| 357 | |
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| 358 | # Set anneeref different for gcm and ce0l |
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| 359 | # Test if executable create_etat0_limit is present and lmdz.x is not present |
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| 360 | if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
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| 361 | # for case ce0l : always take current year |
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| 362 | IGCM_comp_modifyDefFile blocker run.def anneeref ${year} |
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| 363 | |
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| 364 | # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented. |
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| 365 | # In more recent versions of LMDZ, this will not be needed. |
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| 366 | IGCM_comp_modifyDefFile force run.def use_filtre_fft n |
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| 367 | else |
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| 368 | # for case gcm : take first year of simulation |
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| 369 | IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear} |
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| 370 | fi |
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| 371 | |
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| 372 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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| 373 | ## and set corresponding parameters in run.def |
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| 374 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
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| 375 | |
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| 376 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
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| 377 | echo "Activate ORCHIDEE, set VEGET=y in run.def" |
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| 378 | IGCM_comp_modifyDefFile blocker run.def VEGET y |
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| 379 | else |
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| 380 | echo "No ORCHIDEE, set VEGET=n in run.def" |
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| 381 | IGCM_comp_modifyDefFile blocker run.def VEGET n |
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| 382 | fi |
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| 383 | |
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| 384 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
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| 385 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
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| 386 | IGCM_comp_modifyDefFile blocker run.def type_ocean couple |
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| 387 | else |
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| 388 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
---|
| 389 | IGCM_comp_modifyDefFile nonblocker run.def type_ocean force |
---|
| 390 | fi |
---|
| 391 | |
---|
| 392 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
---|
| 393 | echo "Activate coupling to INCA, set type_trac=inca in run.def" |
---|
| 394 | IGCM_comp_modifyDefFile blocker run.def type_trac inca |
---|
| 395 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
---|
| 396 | echo "Activate coupling to REPROBUS, set type_trac=repr in run.def" |
---|
| 397 | IGCM_comp_modifyDefFile blocker run.def type_trac repr |
---|
| 398 | IGCM_comp_modifyDefFile blocker run.def config_inca none |
---|
| 399 | else |
---|
| 400 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
---|
| 401 | IGCM_comp_modifyDefFile blocker run.def type_trac lmdz |
---|
| 402 | IGCM_comp_modifyDefFile blocker run.def config_inca none |
---|
| 403 | fi |
---|
| 404 | |
---|
| 405 | |
---|
| 406 | # run.def : Activate the call to phytrac |
---|
| 407 | if [ ! X${lmdz_UserChoices_iflag_phytrac} = X ]; then |
---|
| 408 | IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac ${lmdz_UserChoices_iflag_phytrac} |
---|
| 409 | else |
---|
| 410 | IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac 0 |
---|
| 411 | fi |
---|
| 412 | |
---|
| 413 | # physiq.def : Activate the call to phytrac |
---|
| 414 | if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then |
---|
| 415 | IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac ${lmdz_UserChoices_ok_bug_cv_trac} |
---|
| 416 | else |
---|
| 417 | IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac n |
---|
| 418 | fi |
---|
| 419 | |
---|
| 420 | # config.def : Activate direct radiative effect if ok_ade=y |
---|
| 421 | if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then |
---|
| 422 | IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade} |
---|
| 423 | else |
---|
| 424 | IGCM_comp_modifyDefFile nonblocker config.def ok_ade n |
---|
| 425 | fi |
---|
| 426 | |
---|
| 427 | # config.def : Activate indirect radiative effect if ok_aie=y |
---|
| 428 | if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then |
---|
| 429 | IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie} |
---|
| 430 | else |
---|
| 431 | IGCM_comp_modifyDefFile nonblocker config.def ok_aie n |
---|
| 432 | fi |
---|
| 433 | |
---|
| 434 | # config.def : Activate online aerosol coupled model if aerosol_couple=y |
---|
| 435 | if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then |
---|
| 436 | IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple} |
---|
| 437 | else |
---|
| 438 | IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n |
---|
| 439 | fi |
---|
| 440 | |
---|
| 441 | # config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y |
---|
| 442 | if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then |
---|
| 443 | IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple} |
---|
| 444 | else |
---|
| 445 | IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n |
---|
| 446 | fi |
---|
| 447 | |
---|
| 448 | # config.def : Activate reading of ozone in climatology if read_climoz=2 |
---|
| 449 | if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then |
---|
| 450 | IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz} |
---|
| 451 | else |
---|
| 452 | IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0 |
---|
| 453 | fi |
---|
| 454 | |
---|
| 455 | # config.def : Choose aerosol use in radiative effect |
---|
| 456 | # type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only |
---|
| 457 | # =5 => dust only =6 => all aerosol |
---|
| 458 | if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then |
---|
| 459 | IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol} |
---|
| 460 | else |
---|
| 461 | IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0 |
---|
| 462 | fi |
---|
| 463 | |
---|
| 464 | # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y |
---|
| 465 | if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then |
---|
| 466 | IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc} |
---|
| 467 | else |
---|
| 468 | IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n |
---|
| 469 | fi |
---|
| 470 | |
---|
| 471 | # config.def : Activate COSP |
---|
| 472 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then |
---|
| 473 | IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK} |
---|
| 474 | else |
---|
| 475 | IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n |
---|
| 476 | fi |
---|
| 477 | |
---|
| 478 | # config.def : Modify parameter pmagic if it is set in lmdz.card |
---|
| 479 | if [ ! X${lmdz_UserChoices_pmagic} = X ]; then |
---|
| 480 | IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic} |
---|
| 481 | else |
---|
| 482 | # Take default value set in config.def |
---|
| 483 | IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT |
---|
| 484 | fi |
---|
| 485 | |
---|
| 486 | # physiq.def : Modify parameter tau_gl if it is set in lmdz.card |
---|
| 487 | if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then |
---|
| 488 | IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl} |
---|
| 489 | else |
---|
| 490 | # Take default value set in physiq.def |
---|
| 491 | IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT |
---|
| 492 | fi |
---|
| 493 | |
---|
| 494 | |
---|
| 495 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
---|
| 496 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
---|
| 497 | IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
---|
| 498 | else |
---|
| 499 | IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n |
---|
| 500 | fi |
---|
| 501 | |
---|
| 502 | |
---|
| 503 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
---|
| 504 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
---|
| 505 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
---|
| 506 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
---|
| 507 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 508 | echo |
---|
| 509 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
---|
| 510 | echo |
---|
| 511 | cat gcm.def |
---|
| 512 | ByPass_hgardfou_teta=n |
---|
| 513 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
---|
| 514 | fi |
---|
| 515 | |
---|
| 516 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
---|
| 517 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
---|
| 518 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
---|
| 519 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
---|
| 520 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 521 | echo |
---|
| 522 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
---|
| 523 | echo |
---|
| 524 | cat gcm.def |
---|
| 525 | ByPass_hgardfou_mats=n |
---|
| 526 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
---|
| 527 | fi |
---|
| 528 | |
---|
| 529 | # Add include of LMDZ context in iodef.xml |
---|
| 530 | # In iodef.xml add on the next line after "COMPONENT CONTEXT" |
---|
| 531 | echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp |
---|
| 532 | # Add inclusion of file context_input_lmdz.xml if this file exists |
---|
| 533 | if [ -f context_input_lmdz.xml ] ; then |
---|
| 534 | echo '<context id="LMDZ" src="./context_input_lmdz.xml"/>' >> add.tmp |
---|
| 535 | fi |
---|
| 536 | # Include xml files for output configuration if running with workflow CMIP6 |
---|
| 537 | if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then |
---|
| 538 | echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp |
---|
| 539 | echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp |
---|
| 540 | fi |
---|
| 541 | cp iodef.xml iodef.xml.tmp |
---|
| 542 | sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml |
---|
| 543 | rm iodef.xml.tmp add.tmp |
---|
| 544 | |
---|
| 545 | #Long Name as global attribute (if LongName is not empty) |
---|
| 546 | if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then |
---|
| 547 | listfile=$(ls file_def*lmdz.xml) |
---|
| 548 | echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp |
---|
| 549 | for file in ${listfile} |
---|
| 550 | do |
---|
| 551 | cp ${file} ${file}.tmp |
---|
| 552 | sed -e "/<file id/r add.tmp" \ |
---|
| 553 | ${file}.tmp > ${file} |
---|
| 554 | rm ${file}.tmp |
---|
| 555 | done |
---|
| 556 | rm add.tmp |
---|
| 557 | fi |
---|
| 558 | |
---|
| 559 | IGCM_debug_PopStack "ATM_Update" |
---|
| 560 | } |
---|
| 561 | |
---|
| 562 | #----------------------------------- |
---|
| 563 | function ATM_Finalize |
---|
| 564 | { |
---|
| 565 | IGCM_debug_PushStack "ATM_Finalize" |
---|
| 566 | |
---|
| 567 | # Add special treatement for CARBON CYCLE |
---|
| 568 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
---|
| 569 | ATM_Carbon_Finalize |
---|
| 570 | fi |
---|
| 571 | |
---|
| 572 | echo FINALIZE ATM ! |
---|
| 573 | |
---|
| 574 | IGCM_debug_PopStack "ATM_Finalize" |
---|
| 575 | } |
---|
| 576 | |
---|
| 577 | |
---|
| 578 | |
---|
| 579 | function ATM_Carbon_Update |
---|
| 580 | { |
---|
| 581 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
| 582 | |
---|
| 583 | IGCM_debug_PushStack "ATM_Carbon_Update" |
---|
| 584 | |
---|
| 585 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
---|
| 586 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 587 | typeset PathCO2log |
---|
| 588 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
---|
| 589 | |
---|
| 590 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
---|
| 591 | ##--Initialization of fluxes to an undefined value at the first run |
---|
| 592 | UndefinedValueCo2=-9999 |
---|
| 593 | InitPeriodCo2=0 |
---|
| 594 | InitDateBeginCo2=${UndefinedValueCo2} |
---|
| 595 | InitYearCo2=$(( ${year} - 1 )) |
---|
| 596 | InitDateEndCo2=${InitYearCo2}1231 |
---|
| 597 | fCO2_ff=${UndefinedValueCo2} |
---|
| 598 | CO2SBG=${UndefinedValueCo2} |
---|
| 599 | CO2LU=${UndefinedValueCo2} |
---|
| 600 | CO2MBG=${UndefinedValueCo2} |
---|
| 601 | CO2_ppm_prec=${UndefinedValueCo2} |
---|
| 602 | # Get the initial value of atmosp. pco2 |
---|
| 603 | CO2_ppm=${lmdz_UserChoices_co2_init} |
---|
| 604 | |
---|
| 605 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 606 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 607 | |
---|
| 608 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 609 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 610 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 611 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 612 | |
---|
| 613 | # Get the path where the log file co2.log is |
---|
| 614 | PathCO2log=${SUBMIT_DIR} |
---|
| 615 | # Get Previous line in co2.log |
---|
| 616 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 617 | |
---|
| 618 | else |
---|
| 619 | |
---|
| 620 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
---|
| 621 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
---|
| 622 | #SubmitRestartPath= |
---|
| 623 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
---|
| 624 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
---|
| 625 | PathCO2log=${config_ATM_SubmitRestartPath} |
---|
| 626 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
---|
| 627 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
---|
| 628 | |
---|
| 629 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 630 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 631 | |
---|
| 632 | # Save Last Line of control in new co2.log file |
---|
| 633 | InitPeriodCo2=0 |
---|
| 634 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
---|
| 635 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
---|
| 636 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
---|
| 637 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
---|
| 638 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
---|
| 639 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
---|
| 640 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
---|
| 641 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 642 | |
---|
| 643 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 644 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 645 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 646 | else |
---|
| 647 | # Get restart line in co2.log |
---|
| 648 | PathCO2log=${SUBMIT_DIR} |
---|
| 649 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 650 | # Get the value of atmosp. pco2 in co2.log |
---|
| 651 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 652 | fi |
---|
| 653 | |
---|
| 654 | fi |
---|
| 655 | |
---|
| 656 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
---|
| 657 | # Modify co2_ppm in config.def only for historical run |
---|
| 658 | # If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile |
---|
| 659 | IGCM_comp_modifyDefFile force config.def co2_ppm ${CO2_ppm} |
---|
| 660 | fi |
---|
| 661 | IGCM_debug_PopStack "ATM_Carbon_Update" |
---|
| 662 | } |
---|
| 663 | |
---|
| 664 | |
---|
| 665 | function ATM_Carbon_Finalize |
---|
| 666 | { |
---|
| 667 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
| 668 | |
---|
| 669 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
---|
| 670 | |
---|
| 671 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 672 | |
---|
| 673 | # Fossil fuel emission |
---|
| 674 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
---|
| 675 | # For Control, no fossil fuel emission : |
---|
| 676 | fCO2_ff=0 |
---|
| 677 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
---|
| 678 | else |
---|
| 679 | # For historical, get the fossile fuel file : |
---|
| 680 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
---|
| 681 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
---|
| 682 | fi |
---|
| 683 | |
---|
| 684 | # Get the value of ocean carbon flux |
---|
| 685 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
---|
| 686 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
---|
| 687 | echo "Ocean carbon flux :" ${CO2MBG} |
---|
| 688 | |
---|
| 689 | # Get the value of land fluxes |
---|
| 690 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
---|
| 691 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
---|
| 692 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
---|
| 693 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
---|
| 694 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
| 695 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
| 696 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
---|
| 697 | |
---|
| 698 | # Previous CO2 |
---|
| 699 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 700 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
| 701 | |
---|
| 702 | # Formula |
---|
| 703 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
| 704 | echo "New CO2 :" ${CO2_ppm} |
---|
| 705 | |
---|
| 706 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 707 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 708 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 709 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 710 | |
---|
| 711 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
| 712 | } |
---|