1 | slurmstepd-irene1510: error: task/cgroup: task[0] unable to set taskset '0x0' |
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2 | + SCRIPT_PID=78506 |
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3 | + set +x |
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4 | + /bin/ksh -x /tmp/jobstart.78483 |
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5 | + BATCH_NUM_PROC_TOT=580 |
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6 | Mon Oct 7 14:31:32 CEST 2019 |
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7 | |
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8 | ####################################### |
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9 | # ANOTHER GREAT SIMULATION # |
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10 | ####################################### |
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11 | |
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12 | |
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13 | ==================================================== |
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14 | Where do we run ? irene1510 |
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15 | Linux irene1510 3.10.0-957.12.2.el7.x86_64 #1 SMP Fri Apr 19 21:09:07 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux |
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16 | ==================================================== |
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17 | |
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18 | Source machine dependent settings for irene Intel X-64 at TGCC |
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19 | 2019-10-07 14:31:32 --Debug1--> Module will be loaded once we know the compiler version |
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20 | 2019-10-07 14:31:32 --Debug1--> List of loaded modules: |
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21 | Currently Loaded Modulefiles: |
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22 | 1) ccc/1.0(default) 25) nco/4.6.0(default) |
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23 | 2) datadir/gencmip6 26) cdo/1.7.2rc6(default) |
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24 | 3) dfldatadir/gencmip6 |
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25 | 4) flavor/buildcompiler/intel/17(default) |
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26 | 5) feature/mkl/lp64 |
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27 | 6) feature/mkl/sequential |
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28 | 7) mkl/17.0.6.256(default) |
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29 | 8) licsrv/intel |
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30 | 9) c/intel/17.0.6.256(default) |
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31 | 10) c++/intel/17.0.6.256(default) |
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32 | 11) fortran/intel/17.0.6.256(default) |
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33 | 12) intel/17.0.6.256(default) |
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34 | 13) flavor/buildmpi/openmpi/2.0 |
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35 | 14) feature/openmpi/mpi_compiler/intel(default) |
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36 | 15) flavor/openmpi/standard(default) |
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37 | 16) hwloc/1.11.3(default) |
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38 | 17) feature/openmpi/net/auto(default) |
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39 | 18) .tuning/openmpi/2.0.4 |
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40 | 19) mpi/openmpi/2.0.4(default) |
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41 | 20) flavor/hdf5/parallel |
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42 | 21) netcdf-c/4.6.0(default) |
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43 | 22) netcdf-fortran/4.4.4(default) |
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44 | 23) hdf5/1.8.20(default) |
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45 | 24) feature/bridge/heterogenous_mpmd |
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46 | Check libIGCM_debug ..............................................[ OK ] |
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47 | Check libIGCM_card ...............................................[ OK ] |
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48 | Check libIGCM_date ...............................................[ OK ] |
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49 | |
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50 | 2019-10-07 14:31:37 --Debug1--> IGCM_config_CommonConfiguration |
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51 | 2019-10-07 14:31:37 --Debug1--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card |
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52 | |
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53 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_UserChoices |
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54 | 2019-10-07 14:31:37 --------------Debug3--> JobName : CM6-pdSST-futAntSIC-002 |
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55 | 2019-10-07 14:31:37 --------------Debug3--> ExperimentName : pdSST-futAntSIC |
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56 | 2019-10-07 14:31:37 --------------Debug3--> SpaceName : PROD |
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57 | 2019-10-07 14:31:37 --------------Debug3--> TagName : LMDZOR |
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58 | 2019-10-07 14:31:37 --------------Debug3--> LongName : IPSLCM6.1.9-LR |
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59 | 2019-10-07 14:31:37 --------------Debug3--> ModelName : IPSL-CM6A-LR |
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60 | 2019-10-07 14:31:37 --------------Debug3--> Member : r2i1p1f1 |
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61 | 2019-10-07 14:31:37 --------------Debug3--> ExpType : LMDZOR/amip_CMIP6 |
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62 | 2019-10-07 14:31:37 --------------Debug3--> DataProject : gencmip6 |
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63 | 2019-10-07 14:31:37 --------------Debug3--> CalendarType : leap |
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64 | 2019-10-07 14:31:37 --------------Debug3--> DateBegin : 2000-04-01 |
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65 | 2019-10-07 14:31:37 --------------Debug3--> DateEnd : 2001-05-31 |
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66 | 2019-10-07 14:31:37 --------------Debug3--> PeriodLength : 9M |
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67 | |
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68 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Ensemble |
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69 | |
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70 | 2019-10-07 14:31:37 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card. |
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71 | 2019-10-07 14:31:37 --Debug1--> Warning: Section Ensemble not found |
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72 | |
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73 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Post |
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74 | 2019-10-07 14:31:37 --------------Debug3--> RebuildFrequency : NONE |
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75 | 2019-10-07 14:31:37 --------------Debug3--> PackFrequency : 18M |
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76 | 2019-10-07 14:31:37 --------------Debug3--> TimeSeriesFrequency : NONE |
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77 | 2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequency : NONE |
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78 | 2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequencyOffset : 0 |
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79 | 2019-10-07 14:31:37 --------------Debug3--> MetricsPCMDI : FALSE |
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80 | |
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81 | unload module dfldatadir/gencmip6 (Data Directory) |
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82 | unload module datadir/gencmip6 (Data Directory) |
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83 | load module datadir/gencmip6 (Data Directory) |
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84 | load module dfldatadir/gencmip6 (Data Directory) |
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85 | 2019-10-07 14:31:38 --Debug1--> Load dfldatadir for DataProject red in config.card : gencmip6 |
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86 | 2019-10-07 14:31:38 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT |
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87 | 2019-10-07 14:31:38 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT |
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88 | 2019-10-07 14:31:38 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/p86ggas/IGCM_OUT |
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89 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/REBUILD |
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90 | 2019-10-07 14:31:38 --------Debug2--> run.card exists |
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91 | IGCM_sys_getJobSchedulerID |
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92 | IGCM_sys_check_quota |
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93 | 2019-10-07 14:31:39 --------Debug2--> IGCM_debug_sendAMQP_projectAccounting |
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94 | |
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95 | 2019-10-07 14:31:39 --Debug1--> IGCM_config_Initialize |
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96 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl |
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97 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/libIGCM |
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98 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/bin |
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99 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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100 | IGCM_sys_TestDir : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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101 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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102 | Keep trace of inital SUBMIT_DIR : |
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103 | total 420 |
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104 | -rw-r--r--. 1 p86ggas gencmip6 5926 Oct 7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000002 |
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105 | drwxr-sr-x. 6 p86ggas gencmip6 4096 Oct 7 14:31 . |
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106 | -rw-r--r--. 1 p86ggas gencmip6 229699 Oct 7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000003 |
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107 | -rw-r--r--. 1 p86ggas gencmip6 1935 Oct 7 14:31 run.card.bak |
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108 | -rw-r--r--. 1 p86ggas gencmip6 1935 Oct 7 14:31 run.card |
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109 | drwxr-sr-x. 52 p86ggas gencmip6 4096 Oct 7 13:29 .. |
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110 | -rw-r--r--. 1 p86ggas gencmip6 5112 Oct 7 13:28 config.card |
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111 | -rw-r--r--. 1 p86ggas gencmip6 6 Oct 7 13:28 tmpa |
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112 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 COMP |
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113 | -rw-r--r--. 1 p86ggas gencmip6 20446 Oct 7 13:28 Job_CM6-pdSST-futAntSIC-002 |
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114 | -rw-r--r--. 1 p86ggas gencmip6 1913 Oct 7 13:28 run.card-oold1 |
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115 | -rw-r--r--. 1 p86ggas gencmip6 5103 Oct 7 13:28 config.card_old |
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116 | -rw-r--r--. 1 p86ggas gencmip6 5103 Oct 7 13:28 config.card-oold2 |
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117 | -rw-r--r--. 1 p86ggas gencmip6 20404 Oct 7 13:28 Job_CM619-pamip-STD_SAVED_36783 |
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118 | -rw-r--r--. 1 p86ggas gencmip6 1727 Oct 7 13:28 run.card-oold2 |
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119 | -rw-r--r--. 1 p86ggas gencmip6 20404 Oct 7 13:28 Job_CM619-pamip-STD_SAVED_149812 |
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120 | -rw-r--r--. 1 p86ggas gencmip6 321 Oct 7 13:28 readme |
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121 | -rw-r--r--. 1 p86ggas gencmip6 6944 Oct 7 13:28 PACKOUTPUT.out_1913357 |
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122 | -rwxr--r--. 1 p86ggas gencmip6 11053 Oct 7 13:28 pack_output.job |
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123 | -rw-r--r--. 1 p86ggas gencmip6 158 Oct 7 13:28 ferret.jnl |
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124 | -rw-r--r--. 1 p86ggas gencmip6 20422 Oct 7 13:28 old_Job_CM619-pamip-STD |
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125 | -rw-r--r--. 1 p86ggas gencmip6 1546 Oct 7 13:28 run.card.init |
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126 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 POST |
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127 | drwxr-sr-x. 2 p86ggas gencmip6 8192 Oct 7 13:28 PARAM |
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128 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 DRIVER |
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129 | |
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130 | 2019-10-07 14:31:39 --Debug1--> DefineArrayFromSection : ListOfComponents |
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131 | 2019-10-07 14:31:39 --------------Debug3--> ATM |
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132 | 2019-10-07 14:31:39 --------------Debug3--> SRF |
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133 | 2019-10-07 14:31:39 --------------Debug3--> SBG |
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134 | 2019-10-07 14:31:39 --------------Debug3--> IOS |
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135 | |
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136 | 2019-10-07 14:31:39 --Debug1--> DefineArrayFromOption : config_Restarts |
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137 | 2019-10-07 14:31:39 --------------Debug3--> OverRule : y |
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138 | 2019-10-07 14:31:39 --------------Debug3--> RestartDate : 2000-03-31 |
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139 | 2019-10-07 14:31:39 --------------Debug3--> RestartJobName : CM6-amip-redo-002 |
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140 | 2019-10-07 14:31:39 --------------Debug3--> RestartPath : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/amip |
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141 | |
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142 | 2019-10-07 14:31:39 --------Debug2--> Define Script_Output_Prefix and Exe_Output |
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143 | 2019-10-07 14:31:39 --------------Debug3--> Script_Output_Prefix = Script_Output |
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144 | 2019-10-07 14:31:39 --------------Debug3--> Exe_Output = out_execution |
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145 | |
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146 | 2019-10-07 14:31:39 --------Debug2--> (Re)Define R_INIT, R_BC and PeriodNb |
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147 | 2019-10-07 14:31:39 --------------Debug3--> R_IN=/ccc/work/cont003/igcmg/igcmg/IGCM |
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148 | 2019-10-07 14:31:39 --------------Debug3--> R_INIT=/ccc/work/cont003/igcmg/igcmg/IGCM/INIT |
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149 | 2019-10-07 14:31:39 --------------Debug3--> R_BC=/ccc/work/cont003/igcmg/igcmg/IGCM/BC |
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150 | 2019-10-07 14:31:39 --------------Debug3--> Loop in main Job with 1 period(s) |
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151 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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152 | IGCM_sys_TestDir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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153 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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154 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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155 | |
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156 | 2019-10-07 14:31:39 --Debug1--> IGCM_comp_Initialize |
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157 | |
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158 | 2019-10-07 14:31:39 --Debug1--> Initialize ATM : lmdz component. |
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159 | 2019-10-07 14:31:39 --------------Debug3--> DefineArrayFromSection : ATM |
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160 | 2019-10-07 14:31:40 --------------Debug3--> Found in section config_ATM : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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161 | 2019-10-07 14:31:40 --Debug1--> Write frequency for lmdz : 1M |
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162 | 2019-10-07 14:31:40 --------Debug2--> Initialize following component library |
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163 | 2019-10-07 14:31:40 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/lmdz.driver |
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164 | 2019-10-07 14:31:40 --------------Debug3--> With tag : LMDZ |
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165 | 2019-10-07 14:31:40 --------------Debug3--> Initialize ATM output directory. |
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166 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM |
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167 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output |
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168 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse |
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169 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM |
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170 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output |
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171 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse |
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172 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Restart |
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173 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Debug |
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174 | 2019-10-07 14:31:40 --------Debug2--> DefineArrayFromSection : lmdz_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card |
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175 | 2019-10-07 14:31:40 --------------Debug3--> lmdz_UserChoices_values: |
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176 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_Physics=NPv6.1.3 |
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177 | 2019-10-07 14:31:40 --------------Debug3--> ConfType=annuel |
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178 | 2019-10-07 14:31:40 --------------Debug3--> flag_aerosol=6 |
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179 | 2019-10-07 14:31:40 --------------Debug3--> ok_ade=y |
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180 | 2019-10-07 14:31:40 --------------Debug3--> ok_aie=y |
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181 | 2019-10-07 14:31:40 --------------Debug3--> aerosol_couple=n |
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182 | 2019-10-07 14:31:40 --------------Debug3--> read_climoz=1 |
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183 | 2019-10-07 14:31:40 --------------Debug3--> ok_cdnc=y |
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184 | 2019-10-07 14:31:40 --------------Debug3--> tau_gl=2. |
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185 | 2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_teta=n |
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186 | 2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_mats=n |
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187 | 2019-10-07 14:31:40 --------------Debug3--> OutLevel=low |
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188 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_OK=y |
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189 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_monthly=n |
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190 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_daily=n |
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191 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_hf=n |
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192 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_monthly=n |
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193 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_daily=n |
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194 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_hf=n |
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195 | 2019-10-07 14:31:40 --------------Debug3--> ok_guide=n |
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196 | 2019-10-07 14:31:40 --------Debug2--> DefineArrayFromOption : lmdz_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card |
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197 | 2019-10-07 14:31:40 --------------Debug3--> 2D time series activated for Post_1M_histmth |
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198 | 2019-10-07 14:31:41 --------------Debug3--> 3D time series activated with chunck for Post_1M_histmth |
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199 | 2019-10-07 14:31:41 --------------Debug3--> Initialize lmdz with driver. |
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200 | LMDZ physics version : NPv6.1.3 |
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201 | |
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202 | 2019-10-07 14:31:41 --Debug1--> Initialize SRF : orchidee component. |
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203 | 2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SRF |
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204 | 2019-10-07 14:31:41 --------------Debug3--> Found in section config_SRF : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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205 | 2019-10-07 14:31:41 --Debug1--> Write frequency for orchidee : |
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206 | 2019-10-07 14:31:41 --------Debug2--> Initialize following component library |
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207 | 2019-10-07 14:31:41 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/orchidee.driver |
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208 | 2019-10-07 14:31:41 --------------Debug3--> With tag : ORCHIDEE |
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209 | 2019-10-07 14:31:41 --------------Debug3--> Initialize SRF output directory. |
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210 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF |
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211 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output |
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212 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse |
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213 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF |
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214 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output |
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215 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse |
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216 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Restart |
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217 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Debug |
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218 | 2019-10-07 14:31:41 --------Debug2--> DefineArrayFromSection : orchidee_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card |
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219 | 2019-10-07 14:31:41 --------------Debug3--> orchidee_UserChoices_values: |
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220 | 2019-10-07 14:31:41 --------------Debug3--> DefSuffix=CWRR |
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221 | 2019-10-07 14:31:41 --------------Debug3--> VEGET_UPDATE=1Y |
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222 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history=0 |
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223 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_out_2=NONE |
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224 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history_4dim=NONE |
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225 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history=1mo |
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226 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_out_2=10800s |
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227 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history_4dim=1mo |
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228 | 2019-10-07 14:31:41 --------Debug2--> DefineArrayFromOption : orchidee_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card |
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229 | 2019-10-07 14:31:41 --------------Debug3--> 2D time series activated for Post_1M_sechiba_history |
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230 | 2019-10-07 14:31:41 --------------Debug3--> 3D time series activated for Post_1M_sechiba_history |
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231 | 2019-10-07 14:31:41 --------------Debug3--> Initialize orchidee with driver. |
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232 | |
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233 | 2019-10-07 14:31:41 --Debug1--> Initialize SBG : stomate component. |
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234 | 2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SBG |
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235 | 2019-10-07 14:31:42 --------------Debug3--> Found in section config_SBG : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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236 | 2019-10-07 14:31:42 --Debug1--> Write frequency for stomate : |
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237 | 2019-10-07 14:31:42 --------Debug2--> Initialize following component library |
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238 | 2019-10-07 14:31:42 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/stomate.driver |
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239 | 2019-10-07 14:31:42 --------------Debug3--> With tag : ORCHIDEE |
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240 | 2019-10-07 14:31:42 --------------Debug3--> Initialize SBG output directory. |
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241 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG |
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242 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output |
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243 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse |
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244 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG |
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245 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output |
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246 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse |
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247 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Restart |
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248 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Debug |
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249 | 2019-10-07 14:31:42 --------Debug2--> DefineArrayFromSection : stomate_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card |
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250 | 2019-10-07 14:31:42 --------------Debug3--> stomate_UserChoices_values: |
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251 | 2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_history=10 |
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252 | 2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_ipcc_history=1 |
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253 | 2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_history=1mo |
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254 | 2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_ipcc_history=1mo |
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255 | 2019-10-07 14:31:42 --------Debug2--> DefineArrayFromOption : stomate_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card |
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256 | 2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_history |
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257 | 2019-10-07 14:31:42 --------------Debug3--> 3D time series activated for Post_1M_stomate_history |
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258 | 2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_ipcc_history |
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259 | 2019-10-07 14:31:42 --------------Debug3--> Initialize stomate with driver. |
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260 | |
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261 | 2019-10-07 14:31:42 --Debug1--> Initialize IOS : xios component. |
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262 | 2019-10-07 14:31:42 --------------Debug3--> DefineArrayFromSection : IOS |
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263 | 2019-10-07 14:31:43 --------------Debug3--> Found in section config_IOS : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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264 | 2019-10-07 14:31:43 --Debug1--> Write frequency for xios : |
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265 | 2019-10-07 14:31:43 --------Debug2--> Initialize following component library |
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266 | 2019-10-07 14:31:43 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/xios.driver |
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267 | 2019-10-07 14:31:43 --------------Debug3--> With tag : XIOS |
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268 | 2019-10-07 14:31:43 --------------Debug3--> Initialize IOS output directory. |
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269 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS |
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270 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output |
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271 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse |
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272 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS |
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273 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output |
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274 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse |
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275 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Restart |
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276 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Debug |
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277 | 2019-10-07 14:31:43 --------Debug2--> DefineArrayFromSection : xios_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card |
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278 | 2019-10-07 14:31:43 --------Debug2--> DefineArrayFromOption : xios_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card |
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279 | 2019-10-07 14:31:43 --------------Debug3--> Initialize xios with driver. |
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280 | INITIALIZE IOS !!! |
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281 | |
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282 | |
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283 | 2019-10-07 14:31:43 --Debug1--> IGCM_config_Check |
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284 | |
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285 | 2019-10-07 14:31:43 --Debug1--> Asynchronous rebuild has not been activated |
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286 | 2019-10-07 14:31:43 --Debug1--> Proceed with standard post-treatment pathway |
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287 | |
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288 | 2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PeriodLength |
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289 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M |
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290 | 2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PeriodLength |
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291 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M |
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292 | 2019-10-07 14:31:43 --Debug1--> Check coherence between PackFrequency and PeriodLength |
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293 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=18M Slave=9M |
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294 | 2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PackFrequency |
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295 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M |
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296 | 2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PackFrequency |
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297 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M |
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298 | 2019-10-07 14:31:43 --Debug1--> Check coherence between Post_1M_histmth Chunck3D frequency and TimeSeriesFrequency |
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299 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=100Y Slave=NONE |
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300 | |
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301 | 2019-10-07 14:31:43 --Debug1--> Check if there is enough space on temporary filesystem |
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302 | IGCM_sys_check_quota |
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303 | |
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304 | 2019-10-07 14:31:46 --Debug1--> Check where RUN_DIR_PATH variable is pointing to |
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305 | IGCM_sys_check_path |
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306 | |
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307 | Starting iteration 1 / 1 |
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308 | |
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309 | 2019-10-07 14:31:46 --Debug1--> IGCM_config_PeriodStart |
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310 | |
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311 | IGCM_sys_Cd : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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312 | 2019-10-07 14:31:46 --------Debug2--> Save previous ksh job output |
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313 | IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000002 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000002.78506 |
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314 | IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000003 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000003.78506 |
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315 | 2019-10-07 14:31:47 --------Debug2--> Save current run.card |
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316 | IGCM_sys_Cp : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/run.card /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/run.card |
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317 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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318 | |
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319 | 2019-10-07 14:31:47 --------Debug2--> Number of months for PeriodLength : 9 |
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320 | |
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321 | 2019-10-07 14:31:47 --Debug1--> IGCM_config_DateCoherency |
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322 | |
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323 | |
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324 | 2019-10-07 14:31:47 --Debug1--> CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card |
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325 | |
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326 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_PeriodStart : Before Execution |
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327 | 2019-10-07 14:31:48 --Debug1--> Year of simulation : 2001 |
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328 | 2019-10-07 14:31:48 --Debug1--> Month of simulation : 01 |
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329 | 2019-10-07 14:31:48 --Debug1--> PeriodLengthInDays : 273 |
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330 | 2019-10-07 14:31:48 --Debug1--> PeriodDateBegin : 20010101 |
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331 | 2019-10-07 14:31:48 --Debug1--> PeriodDateEnd : 20010930 |
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332 | 2019-10-07 14:31:48 --Debug1--> SimulationLengthInDays : 548 |
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333 | 2019-10-07 14:31:48 --Debug1--> ExperienceLengthInDays : 426 |
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334 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_ConfigureExecution |
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335 | 2019-10-07 14:31:48 --Debug1--> ATM |
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336 | 2019-10-07 14:31:48 --------Debug2--> 71MPI |
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337 | 2019-10-07 14:31:48 --------Debug2--> 8OMP |
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338 | 2019-10-07 14:31:48 --Debug1--> IOS |
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339 | 2019-10-07 14:31:48 --------Debug2--> 12MPI |
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340 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment coreNumber = 580 |
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341 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment mpiTasks = 83 |
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342 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment openMPthreads = 8 |
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343 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment executionType = 2 |
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344 | IGCM_sys_build_execution_scripts |
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345 | 2019-10-07 14:31:48 --Debug1--> You run lmdz.x on 8 OMP threads |
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346 | IGCM_sys_Chmod : u+x script_lmdz.x.ksh |
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347 | IGCM_sys_Chmod : u+x script_xios.x.ksh |
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348 | IGCM_sys_Chmod : u+x run_file |
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349 | run_file contains : |
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350 | 71-8 env OMP_NUM_THREADS=8 ./script_lmdz.x.ksh |
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351 | 12-1 env OMP_NUM_THREADS=1 ./script_xios.x.ksh |
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352 | 2019-10-07 14:31:48 --Debug1--> sys Irene : execution command is |
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353 | 2019-10-07 14:31:48 --Debug1--> /usr/bin/time ccc_mprun -E-K1 -f ./run_file |
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354 | 2019-10-07 14:31:48 --Debug1--> break because '${SimulationLengthInDays} -gt ${ExperienceLengthInDays}' : 548 -gt 426 |
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355 | |
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356 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_Finalize |
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357 | |
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358 | IGCM_sys_SendMail : |
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359 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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360 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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361 | 2019-10-07 14:31:58 --Debug1--> Normal End of computation. |
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362 | IGCM_sys_Cd : .. |
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363 | IGCM_sys_RmRunDir : -rf /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506 |
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364 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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365 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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366 | Mon Oct 7 14:31:58 CEST 2019 |
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367 | ########## ########## ########## ########## ########## ########## ########## ########## |
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368 | Execution Sum Up |
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369 | ########## ########## ########## ########## ########## ########## ########## ########## |
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370 | Jobid : 2669745 |
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371 | Jobname : CM6-pdSST-futAntSIC-002 |
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372 | User : p86ggas |
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373 | Account : gen7403@skylake |
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374 | Limits : time = 2:14:00 , memory/task = 3750 Mo |
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375 | Date : submit = 07/10/2019 14:31:29 , start = 07/10/2019 14:31:31 , end = 07/10/2019 16:45:31 |
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376 | Execution : partition = skylake , QoS = normal , Comment = (null) |
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377 | Resources : ntasks = 624 , cpus/task = 1 , ncpus = 624 , nodes = 13 |
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378 | Nodes=irene[1510-1522] CPU_IDs=0-47 Mem=180000 GRES_IDX= |
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379 | |
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380 | Memory / step |
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381 | -------------- |
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382 | Resident Size (Mo) Virtual Size (Go) |
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383 | JobID Max (Node:Task) AveTask Max (Node:Task) AveTask |
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384 | ----------- ------------------------ ------- -------------------------- ------- |
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385 | |
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386 | Accounting / step |
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387 | ------------------ |
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388 | |
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389 | JobID JobName Ntasks Ncpus Nnodes Layout Elapsed User System Eff State |
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390 | ------------ ------------ ------ ----- ------ ------- ------- ------- ------ --- ----- |
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391 | 2669745 CM6-pdSST-futAntSIC-002 - 624 13 - 00:00:29 (100%) - - - - |
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392 | ########## ########## ########## ########## ########## ########## ########## ########## |
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