[5161] | 1 | slurmstepd-irene1510: error: task/cgroup: task[0] unable to set taskset '0x0' |
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| 2 | + SCRIPT_PID=78506 |
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| 3 | + set +x |
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| 4 | + /bin/ksh -x /tmp/jobstart.78483 |
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| 5 | + BATCH_NUM_PROC_TOT=580 |
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| 6 | Mon Oct 7 14:31:32 CEST 2019 |
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| 7 | |
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| 8 | ####################################### |
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| 9 | # ANOTHER GREAT SIMULATION # |
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| 10 | ####################################### |
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| 11 | |
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| 12 | |
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| 13 | ==================================================== |
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| 14 | Where do we run ? irene1510 |
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| 15 | Linux irene1510 3.10.0-957.12.2.el7.x86_64 #1 SMP Fri Apr 19 21:09:07 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux |
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| 16 | ==================================================== |
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| 17 | |
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| 18 | Source machine dependent settings for irene Intel X-64 at TGCC |
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| 19 | 2019-10-07 14:31:32 --Debug1--> Module will be loaded once we know the compiler version |
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| 20 | 2019-10-07 14:31:32 --Debug1--> List of loaded modules: |
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| 21 | Currently Loaded Modulefiles: |
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| 22 | 1) ccc/1.0(default) 25) nco/4.6.0(default) |
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| 23 | 2) datadir/gencmip6 26) cdo/1.7.2rc6(default) |
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| 24 | 3) dfldatadir/gencmip6 |
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| 25 | 4) flavor/buildcompiler/intel/17(default) |
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| 26 | 5) feature/mkl/lp64 |
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| 27 | 6) feature/mkl/sequential |
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| 28 | 7) mkl/17.0.6.256(default) |
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| 29 | 8) licsrv/intel |
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| 30 | 9) c/intel/17.0.6.256(default) |
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| 31 | 10) c++/intel/17.0.6.256(default) |
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| 32 | 11) fortran/intel/17.0.6.256(default) |
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| 33 | 12) intel/17.0.6.256(default) |
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| 34 | 13) flavor/buildmpi/openmpi/2.0 |
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| 35 | 14) feature/openmpi/mpi_compiler/intel(default) |
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| 36 | 15) flavor/openmpi/standard(default) |
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| 37 | 16) hwloc/1.11.3(default) |
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| 38 | 17) feature/openmpi/net/auto(default) |
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| 39 | 18) .tuning/openmpi/2.0.4 |
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| 40 | 19) mpi/openmpi/2.0.4(default) |
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| 41 | 20) flavor/hdf5/parallel |
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| 42 | 21) netcdf-c/4.6.0(default) |
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| 43 | 22) netcdf-fortran/4.4.4(default) |
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| 44 | 23) hdf5/1.8.20(default) |
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| 45 | 24) feature/bridge/heterogenous_mpmd |
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| 46 | Check libIGCM_debug ..............................................[ OK ] |
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| 47 | Check libIGCM_card ...............................................[ OK ] |
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| 48 | Check libIGCM_date ...............................................[ OK ] |
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| 49 | |
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| 50 | 2019-10-07 14:31:37 --Debug1--> IGCM_config_CommonConfiguration |
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| 51 | 2019-10-07 14:31:37 --Debug1--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card |
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| 52 | |
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| 53 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_UserChoices |
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| 54 | 2019-10-07 14:31:37 --------------Debug3--> JobName : CM6-pdSST-futAntSIC-002 |
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| 55 | 2019-10-07 14:31:37 --------------Debug3--> ExperimentName : pdSST-futAntSIC |
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| 56 | 2019-10-07 14:31:37 --------------Debug3--> SpaceName : PROD |
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| 57 | 2019-10-07 14:31:37 --------------Debug3--> TagName : LMDZOR |
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| 58 | 2019-10-07 14:31:37 --------------Debug3--> LongName : IPSLCM6.1.9-LR |
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| 59 | 2019-10-07 14:31:37 --------------Debug3--> ModelName : IPSL-CM6A-LR |
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| 60 | 2019-10-07 14:31:37 --------------Debug3--> Member : r2i1p1f1 |
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| 61 | 2019-10-07 14:31:37 --------------Debug3--> ExpType : LMDZOR/amip_CMIP6 |
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| 62 | 2019-10-07 14:31:37 --------------Debug3--> DataProject : gencmip6 |
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| 63 | 2019-10-07 14:31:37 --------------Debug3--> CalendarType : leap |
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| 64 | 2019-10-07 14:31:37 --------------Debug3--> DateBegin : 2000-04-01 |
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| 65 | 2019-10-07 14:31:37 --------------Debug3--> DateEnd : 2001-05-31 |
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| 66 | 2019-10-07 14:31:37 --------------Debug3--> PeriodLength : 9M |
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| 67 | |
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| 68 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Ensemble |
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| 69 | |
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| 70 | 2019-10-07 14:31:37 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/config.card. |
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| 71 | 2019-10-07 14:31:37 --Debug1--> Warning: Section Ensemble not found |
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| 72 | |
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| 73 | 2019-10-07 14:31:37 --Debug1--> DefineArrayFromOption : config_Post |
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| 74 | 2019-10-07 14:31:37 --------------Debug3--> RebuildFrequency : NONE |
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| 75 | 2019-10-07 14:31:37 --------------Debug3--> PackFrequency : 18M |
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| 76 | 2019-10-07 14:31:37 --------------Debug3--> TimeSeriesFrequency : NONE |
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| 77 | 2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequency : NONE |
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| 78 | 2019-10-07 14:31:37 --------------Debug3--> SeasonalFrequencyOffset : 0 |
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| 79 | 2019-10-07 14:31:37 --------------Debug3--> MetricsPCMDI : FALSE |
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| 80 | |
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| 81 | unload module dfldatadir/gencmip6 (Data Directory) |
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| 82 | unload module datadir/gencmip6 (Data Directory) |
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| 83 | load module datadir/gencmip6 (Data Directory) |
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| 84 | load module dfldatadir/gencmip6 (Data Directory) |
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| 85 | 2019-10-07 14:31:38 --Debug1--> Load dfldatadir for DataProject red in config.card : gencmip6 |
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| 86 | 2019-10-07 14:31:38 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT |
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| 87 | 2019-10-07 14:31:38 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT |
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| 88 | 2019-10-07 14:31:38 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/p86ggas/IGCM_OUT |
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| 89 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/REBUILD |
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| 90 | 2019-10-07 14:31:38 --------Debug2--> run.card exists |
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| 91 | IGCM_sys_getJobSchedulerID |
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| 92 | IGCM_sys_check_quota |
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| 93 | 2019-10-07 14:31:39 --------Debug2--> IGCM_debug_sendAMQP_projectAccounting |
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| 94 | |
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| 95 | 2019-10-07 14:31:39 --Debug1--> IGCM_config_Initialize |
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| 96 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl |
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| 97 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/libIGCM |
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| 98 | IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/bin |
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| 99 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 100 | IGCM_sys_TestDir : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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| 101 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 102 | Keep trace of inital SUBMIT_DIR : |
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| 103 | total 420 |
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| 104 | -rw-r--r--. 1 p86ggas gencmip6 5926 Oct 7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000002 |
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| 105 | drwxr-sr-x. 6 p86ggas gencmip6 4096 Oct 7 14:31 . |
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| 106 | -rw-r--r--. 1 p86ggas gencmip6 229699 Oct 7 14:31 Script_Output_CM6-pdSST-futAntSIC-002.000003 |
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| 107 | -rw-r--r--. 1 p86ggas gencmip6 1935 Oct 7 14:31 run.card.bak |
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| 108 | -rw-r--r--. 1 p86ggas gencmip6 1935 Oct 7 14:31 run.card |
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| 109 | drwxr-sr-x. 52 p86ggas gencmip6 4096 Oct 7 13:29 .. |
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| 110 | -rw-r--r--. 1 p86ggas gencmip6 5112 Oct 7 13:28 config.card |
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| 111 | -rw-r--r--. 1 p86ggas gencmip6 6 Oct 7 13:28 tmpa |
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| 112 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 COMP |
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| 113 | -rw-r--r--. 1 p86ggas gencmip6 20446 Oct 7 13:28 Job_CM6-pdSST-futAntSIC-002 |
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| 114 | -rw-r--r--. 1 p86ggas gencmip6 1913 Oct 7 13:28 run.card-oold1 |
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| 115 | -rw-r--r--. 1 p86ggas gencmip6 5103 Oct 7 13:28 config.card_old |
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| 116 | -rw-r--r--. 1 p86ggas gencmip6 5103 Oct 7 13:28 config.card-oold2 |
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| 117 | -rw-r--r--. 1 p86ggas gencmip6 20404 Oct 7 13:28 Job_CM619-pamip-STD_SAVED_36783 |
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| 118 | -rw-r--r--. 1 p86ggas gencmip6 1727 Oct 7 13:28 run.card-oold2 |
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| 119 | -rw-r--r--. 1 p86ggas gencmip6 20404 Oct 7 13:28 Job_CM619-pamip-STD_SAVED_149812 |
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| 120 | -rw-r--r--. 1 p86ggas gencmip6 321 Oct 7 13:28 readme |
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| 121 | -rw-r--r--. 1 p86ggas gencmip6 6944 Oct 7 13:28 PACKOUTPUT.out_1913357 |
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| 122 | -rwxr--r--. 1 p86ggas gencmip6 11053 Oct 7 13:28 pack_output.job |
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| 123 | -rw-r--r--. 1 p86ggas gencmip6 158 Oct 7 13:28 ferret.jnl |
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| 124 | -rw-r--r--. 1 p86ggas gencmip6 20422 Oct 7 13:28 old_Job_CM619-pamip-STD |
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| 125 | -rw-r--r--. 1 p86ggas gencmip6 1546 Oct 7 13:28 run.card.init |
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| 126 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 POST |
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| 127 | drwxr-sr-x. 2 p86ggas gencmip6 8192 Oct 7 13:28 PARAM |
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| 128 | drwxr-sr-x. 2 p86ggas gencmip6 4096 Oct 7 13:28 DRIVER |
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| 129 | |
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| 130 | 2019-10-07 14:31:39 --Debug1--> DefineArrayFromSection : ListOfComponents |
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| 131 | 2019-10-07 14:31:39 --------------Debug3--> ATM |
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| 132 | 2019-10-07 14:31:39 --------------Debug3--> SRF |
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| 133 | 2019-10-07 14:31:39 --------------Debug3--> SBG |
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| 134 | 2019-10-07 14:31:39 --------------Debug3--> IOS |
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| 135 | |
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| 136 | 2019-10-07 14:31:39 --Debug1--> DefineArrayFromOption : config_Restarts |
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| 137 | 2019-10-07 14:31:39 --------------Debug3--> OverRule : y |
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| 138 | 2019-10-07 14:31:39 --------------Debug3--> RestartDate : 2000-03-31 |
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| 139 | 2019-10-07 14:31:39 --------------Debug3--> RestartJobName : CM6-amip-redo-002 |
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| 140 | 2019-10-07 14:31:39 --------------Debug3--> RestartPath : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/amip |
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| 141 | |
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| 142 | 2019-10-07 14:31:39 --------Debug2--> Define Script_Output_Prefix and Exe_Output |
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| 143 | 2019-10-07 14:31:39 --------------Debug3--> Script_Output_Prefix = Script_Output |
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| 144 | 2019-10-07 14:31:39 --------------Debug3--> Exe_Output = out_execution |
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| 145 | |
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| 146 | 2019-10-07 14:31:39 --------Debug2--> (Re)Define R_INIT, R_BC and PeriodNb |
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| 147 | 2019-10-07 14:31:39 --------------Debug3--> R_IN=/ccc/work/cont003/igcmg/igcmg/IGCM |
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| 148 | 2019-10-07 14:31:39 --------------Debug3--> R_INIT=/ccc/work/cont003/igcmg/igcmg/IGCM/INIT |
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| 149 | 2019-10-07 14:31:39 --------------Debug3--> R_BC=/ccc/work/cont003/igcmg/igcmg/IGCM/BC |
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| 150 | 2019-10-07 14:31:39 --------------Debug3--> Loop in main Job with 1 period(s) |
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| 151 | IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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| 152 | IGCM_sys_TestDir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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| 153 | IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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| 154 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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| 155 | |
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| 156 | 2019-10-07 14:31:39 --Debug1--> IGCM_comp_Initialize |
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| 157 | |
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| 158 | 2019-10-07 14:31:39 --Debug1--> Initialize ATM : lmdz component. |
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| 159 | 2019-10-07 14:31:39 --------------Debug3--> DefineArrayFromSection : ATM |
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| 160 | 2019-10-07 14:31:40 --------------Debug3--> Found in section config_ATM : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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| 161 | 2019-10-07 14:31:40 --Debug1--> Write frequency for lmdz : 1M |
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| 162 | 2019-10-07 14:31:40 --------Debug2--> Initialize following component library |
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| 163 | 2019-10-07 14:31:40 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/lmdz.driver |
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| 164 | 2019-10-07 14:31:40 --------------Debug3--> With tag : LMDZ |
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| 165 | 2019-10-07 14:31:40 --------------Debug3--> Initialize ATM output directory. |
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| 166 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM |
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| 167 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output |
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| 168 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse |
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| 169 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM |
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| 170 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Output |
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| 171 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Analyse |
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| 172 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Restart |
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| 173 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/ATM/Debug |
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| 174 | 2019-10-07 14:31:40 --------Debug2--> DefineArrayFromSection : lmdz_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card |
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| 175 | 2019-10-07 14:31:40 --------------Debug3--> lmdz_UserChoices_values: |
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| 176 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_Physics=NPv6.1.3 |
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| 177 | 2019-10-07 14:31:40 --------------Debug3--> ConfType=annuel |
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| 178 | 2019-10-07 14:31:40 --------------Debug3--> flag_aerosol=6 |
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| 179 | 2019-10-07 14:31:40 --------------Debug3--> ok_ade=y |
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| 180 | 2019-10-07 14:31:40 --------------Debug3--> ok_aie=y |
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| 181 | 2019-10-07 14:31:40 --------------Debug3--> aerosol_couple=n |
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| 182 | 2019-10-07 14:31:40 --------------Debug3--> read_climoz=1 |
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| 183 | 2019-10-07 14:31:40 --------------Debug3--> ok_cdnc=y |
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| 184 | 2019-10-07 14:31:40 --------------Debug3--> tau_gl=2. |
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| 185 | 2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_teta=n |
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| 186 | 2019-10-07 14:31:40 --------------Debug3--> ByPass_hgardfou_mats=n |
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| 187 | 2019-10-07 14:31:40 --------------Debug3--> OutLevel=low |
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| 188 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_OK=y |
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| 189 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_monthly=n |
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| 190 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_daily=n |
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| 191 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_COSP_hf=n |
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| 192 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_monthly=n |
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| 193 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_daily=n |
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| 194 | 2019-10-07 14:31:40 --------------Debug3--> LMDZ_NMC_hf=n |
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| 195 | 2019-10-07 14:31:40 --------------Debug3--> ok_guide=n |
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| 196 | 2019-10-07 14:31:40 --------Debug2--> DefineArrayFromOption : lmdz_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/lmdz.card |
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| 197 | 2019-10-07 14:31:40 --------------Debug3--> 2D time series activated for Post_1M_histmth |
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| 198 | 2019-10-07 14:31:41 --------------Debug3--> 3D time series activated with chunck for Post_1M_histmth |
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| 199 | 2019-10-07 14:31:41 --------------Debug3--> Initialize lmdz with driver. |
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| 200 | LMDZ physics version : NPv6.1.3 |
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| 201 | |
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| 202 | 2019-10-07 14:31:41 --Debug1--> Initialize SRF : orchidee component. |
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| 203 | 2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SRF |
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| 204 | 2019-10-07 14:31:41 --------------Debug3--> Found in section config_SRF : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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| 205 | 2019-10-07 14:31:41 --Debug1--> Write frequency for orchidee : |
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| 206 | 2019-10-07 14:31:41 --------Debug2--> Initialize following component library |
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| 207 | 2019-10-07 14:31:41 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/orchidee.driver |
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| 208 | 2019-10-07 14:31:41 --------------Debug3--> With tag : ORCHIDEE |
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| 209 | 2019-10-07 14:31:41 --------------Debug3--> Initialize SRF output directory. |
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| 210 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF |
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| 211 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output |
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| 212 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse |
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| 213 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF |
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| 214 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Output |
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| 215 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Analyse |
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| 216 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Restart |
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| 217 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SRF/Debug |
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| 218 | 2019-10-07 14:31:41 --------Debug2--> DefineArrayFromSection : orchidee_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card |
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| 219 | 2019-10-07 14:31:41 --------------Debug3--> orchidee_UserChoices_values: |
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| 220 | 2019-10-07 14:31:41 --------------Debug3--> DefSuffix=CWRR |
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| 221 | 2019-10-07 14:31:41 --------------Debug3--> VEGET_UPDATE=1Y |
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| 222 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history=0 |
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| 223 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_out_2=NONE |
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| 224 | 2019-10-07 14:31:41 --------------Debug3--> output_level_sechiba_history_4dim=NONE |
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| 225 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history=1mo |
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| 226 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_out_2=10800s |
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| 227 | 2019-10-07 14:31:41 --------------Debug3--> output_freq_sechiba_history_4dim=1mo |
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| 228 | 2019-10-07 14:31:41 --------Debug2--> DefineArrayFromOption : orchidee_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/orchidee.card |
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| 229 | 2019-10-07 14:31:41 --------------Debug3--> 2D time series activated for Post_1M_sechiba_history |
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| 230 | 2019-10-07 14:31:41 --------------Debug3--> 3D time series activated for Post_1M_sechiba_history |
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| 231 | 2019-10-07 14:31:41 --------------Debug3--> Initialize orchidee with driver. |
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| 232 | |
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| 233 | 2019-10-07 14:31:41 --Debug1--> Initialize SBG : stomate component. |
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| 234 | 2019-10-07 14:31:41 --------------Debug3--> DefineArrayFromSection : SBG |
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| 235 | 2019-10-07 14:31:42 --------------Debug3--> Found in section config_SBG : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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| 236 | 2019-10-07 14:31:42 --Debug1--> Write frequency for stomate : |
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| 237 | 2019-10-07 14:31:42 --------Debug2--> Initialize following component library |
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| 238 | 2019-10-07 14:31:42 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/stomate.driver |
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| 239 | 2019-10-07 14:31:42 --------------Debug3--> With tag : ORCHIDEE |
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| 240 | 2019-10-07 14:31:42 --------------Debug3--> Initialize SBG output directory. |
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| 241 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG |
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| 242 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output |
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| 243 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse |
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| 244 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG |
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| 245 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Output |
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| 246 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Analyse |
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| 247 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Restart |
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| 248 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/SBG/Debug |
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| 249 | 2019-10-07 14:31:42 --------Debug2--> DefineArrayFromSection : stomate_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card |
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| 250 | 2019-10-07 14:31:42 --------------Debug3--> stomate_UserChoices_values: |
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| 251 | 2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_history=10 |
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| 252 | 2019-10-07 14:31:42 --------------Debug3--> output_level_stomate_ipcc_history=1 |
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| 253 | 2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_history=1mo |
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| 254 | 2019-10-07 14:31:42 --------------Debug3--> output_freq_stomate_ipcc_history=1mo |
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| 255 | 2019-10-07 14:31:42 --------Debug2--> DefineArrayFromOption : stomate_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/stomate.card |
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| 256 | 2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_history |
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| 257 | 2019-10-07 14:31:42 --------------Debug3--> 3D time series activated for Post_1M_stomate_history |
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| 258 | 2019-10-07 14:31:42 --------------Debug3--> 2D time series activated for Post_1M_stomate_ipcc_history |
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| 259 | 2019-10-07 14:31:42 --------------Debug3--> Initialize stomate with driver. |
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| 260 | |
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| 261 | 2019-10-07 14:31:42 --Debug1--> Initialize IOS : xios component. |
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| 262 | 2019-10-07 14:31:42 --------------Debug3--> DefineArrayFromSection : IOS |
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| 263 | 2019-10-07 14:31:43 --------------Debug3--> Found in section config_IOS : WriteFrequency Restart RestartDate RestartJobName RestartPath |
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| 264 | 2019-10-07 14:31:43 --Debug1--> Write frequency for xios : |
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| 265 | 2019-10-07 14:31:43 --------Debug2--> Initialize following component library |
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| 266 | 2019-10-07 14:31:43 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/DRIVER/xios.driver |
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| 267 | 2019-10-07 14:31:43 --------------Debug3--> With tag : XIOS |
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| 268 | 2019-10-07 14:31:43 --------------Debug3--> Initialize IOS output directory. |
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| 269 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS |
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| 270 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output |
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| 271 | IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse |
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| 272 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS |
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| 273 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Output |
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| 274 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Analyse |
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| 275 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Restart |
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| 276 | IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/IOS/Debug |
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| 277 | 2019-10-07 14:31:43 --------Debug2--> DefineArrayFromSection : xios_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card |
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| 278 | 2019-10-07 14:31:43 --------Debug2--> DefineArrayFromOption : xios_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/COMP/xios.card |
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| 279 | 2019-10-07 14:31:43 --------------Debug3--> Initialize xios with driver. |
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| 280 | INITIALIZE IOS !!! |
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| 281 | |
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| 282 | |
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| 283 | 2019-10-07 14:31:43 --Debug1--> IGCM_config_Check |
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| 284 | |
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| 285 | 2019-10-07 14:31:43 --Debug1--> Asynchronous rebuild has not been activated |
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| 286 | 2019-10-07 14:31:43 --Debug1--> Proceed with standard post-treatment pathway |
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| 287 | |
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| 288 | 2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PeriodLength |
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| 289 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M |
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| 290 | 2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PeriodLength |
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| 291 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M |
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| 292 | 2019-10-07 14:31:43 --Debug1--> Check coherence between PackFrequency and PeriodLength |
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| 293 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=18M Slave=9M |
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| 294 | 2019-10-07 14:31:43 --Debug1--> Check coherence between TimeSeriesFrequency and PackFrequency |
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| 295 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M |
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| 296 | 2019-10-07 14:31:43 --Debug1--> Check coherence between SeasonalFrequency and PackFrequency |
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| 297 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M |
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| 298 | 2019-10-07 14:31:43 --Debug1--> Check coherence between Post_1M_histmth Chunck3D frequency and TimeSeriesFrequency |
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| 299 | 2019-10-07 14:31:43 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=100Y Slave=NONE |
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| 300 | |
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| 301 | 2019-10-07 14:31:43 --Debug1--> Check if there is enough space on temporary filesystem |
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| 302 | IGCM_sys_check_quota |
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| 303 | |
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| 304 | 2019-10-07 14:31:46 --Debug1--> Check where RUN_DIR_PATH variable is pointing to |
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| 305 | IGCM_sys_check_path |
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| 306 | |
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| 307 | Starting iteration 1 / 1 |
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| 308 | |
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| 309 | 2019-10-07 14:31:46 --Debug1--> IGCM_config_PeriodStart |
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| 310 | |
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| 311 | IGCM_sys_Cd : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002 |
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| 312 | 2019-10-07 14:31:46 --------Debug2--> Save previous ksh job output |
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| 313 | IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000002 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000002.78506 |
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| 314 | IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-002.000003 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/Script_Output_CM6-pdSST-futAntSIC-002.000003.78506 |
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| 315 | 2019-10-07 14:31:47 --------Debug2--> Save current run.card |
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| 316 | IGCM_sys_Cp : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/run.card /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-002/Out/run.card |
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| 317 | IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506/CM6-pdSST-futAntSIC-002.78506 |
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| 318 | |
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| 319 | 2019-10-07 14:31:47 --------Debug2--> Number of months for PeriodLength : 9 |
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| 320 | |
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| 321 | 2019-10-07 14:31:47 --Debug1--> IGCM_config_DateCoherency |
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| 322 | |
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| 323 | |
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| 324 | 2019-10-07 14:31:47 --Debug1--> CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card |
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| 325 | |
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| 326 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_PeriodStart : Before Execution |
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| 327 | 2019-10-07 14:31:48 --Debug1--> Year of simulation : 2001 |
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| 328 | 2019-10-07 14:31:48 --Debug1--> Month of simulation : 01 |
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| 329 | 2019-10-07 14:31:48 --Debug1--> PeriodLengthInDays : 273 |
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| 330 | 2019-10-07 14:31:48 --Debug1--> PeriodDateBegin : 20010101 |
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| 331 | 2019-10-07 14:31:48 --Debug1--> PeriodDateEnd : 20010930 |
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| 332 | 2019-10-07 14:31:48 --Debug1--> SimulationLengthInDays : 548 |
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| 333 | 2019-10-07 14:31:48 --Debug1--> ExperienceLengthInDays : 426 |
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| 334 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_ConfigureExecution |
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| 335 | 2019-10-07 14:31:48 --Debug1--> ATM |
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| 336 | 2019-10-07 14:31:48 --------Debug2--> 71MPI |
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| 337 | 2019-10-07 14:31:48 --------Debug2--> 8OMP |
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| 338 | 2019-10-07 14:31:48 --Debug1--> IOS |
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| 339 | 2019-10-07 14:31:48 --------Debug2--> 12MPI |
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| 340 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment coreNumber = 580 |
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| 341 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment mpiTasks = 83 |
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| 342 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment openMPthreads = 8 |
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| 343 | 2019-10-07 14:31:48 --Debug1--> MPI/OMP treatment executionType = 2 |
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| 344 | IGCM_sys_build_execution_scripts |
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| 345 | 2019-10-07 14:31:48 --Debug1--> You run lmdz.x on 8 OMP threads |
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| 346 | IGCM_sys_Chmod : u+x script_lmdz.x.ksh |
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| 347 | IGCM_sys_Chmod : u+x script_xios.x.ksh |
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| 348 | IGCM_sys_Chmod : u+x run_file |
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| 349 | run_file contains : |
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| 350 | 71-8 env OMP_NUM_THREADS=8 ./script_lmdz.x.ksh |
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| 351 | 12-1 env OMP_NUM_THREADS=1 ./script_xios.x.ksh |
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| 352 | 2019-10-07 14:31:48 --Debug1--> sys Irene : execution command is |
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| 353 | 2019-10-07 14:31:48 --Debug1--> /usr/bin/time ccc_mprun -E-K1 -f ./run_file |
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| 354 | 2019-10-07 14:31:48 --Debug1--> break because '${SimulationLengthInDays} -gt ${ExperienceLengthInDays}' : 548 -gt 426 |
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| 355 | |
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| 356 | 2019-10-07 14:31:48 --Debug1--> IGCM_config_Finalize |
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| 357 | |
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| 358 | IGCM_sys_SendMail : |
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| 359 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 360 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 361 | 2019-10-07 14:31:58 --Debug1--> Normal End of computation. |
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| 362 | IGCM_sys_Cd : .. |
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| 363 | IGCM_sys_RmRunDir : -rf /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669745_78506 |
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| 364 | send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 365 | postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol |
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| 366 | Mon Oct 7 14:31:58 CEST 2019 |
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| 367 | ########## ########## ########## ########## ########## ########## ########## ########## |
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| 368 | Execution Sum Up |
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| 369 | ########## ########## ########## ########## ########## ########## ########## ########## |
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| 370 | Jobid : 2669745 |
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| 371 | Jobname : CM6-pdSST-futAntSIC-002 |
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| 372 | User : p86ggas |
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| 373 | Account : gen7403@skylake |
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| 374 | Limits : time = 2:14:00 , memory/task = 3750 Mo |
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| 375 | Date : submit = 07/10/2019 14:31:29 , start = 07/10/2019 14:31:31 , end = 07/10/2019 16:45:31 |
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| 376 | Execution : partition = skylake , QoS = normal , Comment = (null) |
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| 377 | Resources : ntasks = 624 , cpus/task = 1 , ncpus = 624 , nodes = 13 |
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| 378 | Nodes=irene[1510-1522] CPU_IDs=0-47 Mem=180000 GRES_IDX= |
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| 379 | |
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| 380 | Memory / step |
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| 381 | -------------- |
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| 382 | Resident Size (Mo) Virtual Size (Go) |
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| 383 | JobID Max (Node:Task) AveTask Max (Node:Task) AveTask |
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| 384 | ----------- ------------------------ ------- -------------------------- ------- |
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| 385 | |
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| 386 | Accounting / step |
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| 387 | ------------------ |
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| 388 | |
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| 389 | JobID JobName Ntasks Ncpus Nnodes Layout Elapsed User System Eff State |
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| 390 | ------------ ------------ ------ ----- ------ ------- ------- ------- ------ --- ----- |
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| 391 | 2669745 CM6-pdSST-futAntSIC-002 - 624 13 - 00:00:29 (100%) - - - - |
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| 392 | ########## ########## ########## ########## ########## ########## ########## ########## |
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