1 | #!/bin/bash |
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2 | |
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3 | function replace() # KEY VALUE FILE |
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4 | { |
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5 | # strip leading zeros that confuse ccc_msub |
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6 | VALUE=$(echo $2 | sed 's/^0*//') |
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7 | sed -i -e "s/$1/$VALUE/g" $3 |
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8 | echo "$1=$VALUE" >> params.sh |
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9 | } |
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10 | |
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11 | function create_run() # NBP TIME_STEP NSPLIT OMP_LEVEL_SIZE NB_MPI NB_OMP |
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12 | { |
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13 | NBP=$1 |
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14 | TIME_STEP=$2 |
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15 | shift; shift |
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16 | |
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17 | NAME="run_$1_$2_$3_$4" |
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18 | mkdir $NAME |
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19 | cp run.def job.sh mpmd.conf gcm.sh *.xml $NAME |
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20 | cd $NAME |
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21 | touch params.sh |
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22 | |
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23 | replace NBP $NBP run.def |
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24 | replace TIME_STEP $TIME_STEP run.def |
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25 | replace NSPLIT $1 run.def |
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26 | replace OMP_LEVEL_SIZE $2 run.def |
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27 | replace NUM_MPI $3 mpmd.conf |
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28 | replace NUM_MPI $3 job.sh |
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29 | replace NUM_OMP $4 job.sh |
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30 | cd .. |
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31 | } |
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32 | |
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33 | function cmd_create_220km() |
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34 | { |
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35 | rm -rf run_* |
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36 | create_run 41 600 4 6 040 24 |
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37 | create_run 41 600 4 6 080 12 |
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38 | create_run 41 600 4 6 160 06 |
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39 | create_run 41 600 4 4 160 04 |
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40 | create_run 41 600 4 4 080 08 |
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41 | create_run 41 600 4 2 040 08 |
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42 | create_run 41 600 4 1 020 08 |
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43 | create_run 41 600 4 1 040 04 |
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44 | create_run 41 600 4 1 080 02 |
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45 | create_run 41 600 4 1 160 01 |
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46 | create_run 41 600 2 1 040 01 |
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47 | ls -d run_* |
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48 | } |
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49 | |
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50 | function cmd_create_110km() |
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51 | { |
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52 | rm -rf run_* |
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53 | create_run 81 300 4 1 160 01 |
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54 | create_run 81 300 6 1 360 01 |
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55 | create_run 81 300 8 1 160 04 |
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56 | create_run 81 300 8 1 640 01 |
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57 | ls -d run_* |
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58 | } |
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59 | |
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60 | function cmd_create_70km() |
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61 | { |
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62 | rm -rf run_* |
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63 | create_run 129 200 8 1 640 01 |
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64 | create_run 129 200 10 1 1000 01 |
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65 | create_run 129 200 12 1 1440 01 |
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66 | create_run 129 200 16 1 2560 01 |
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67 | ls -d run_* |
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68 | } |
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69 | |
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70 | function cmd_create_35km() |
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71 | { |
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72 | rm -rf run_* |
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73 | create_run 257 100 12 1 1440 1 |
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74 | create_run 257 100 12 1 0720 2 |
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75 | create_run 257 100 12 1 0360 4 |
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76 | create_run 257 100 12 1 0120 12 |
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77 | create_run 257 100 12 1 0060 24 |
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78 | create_run 257 100 12 2 1440 2 |
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79 | create_run 257 100 12 4 1440 4 |
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80 | create_run 257 100 12 6 1440 6 |
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81 | create_run 257 100 12 8 1440 8 |
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82 | create_run 257 100 16 1 2560 1 |
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83 | create_run 257 100 16 1 1280 2 |
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84 | create_run 257 100 16 1 0640 4 |
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85 | create_run 257 100 16 1 0320 8 |
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86 | create_run 257 100 16 4 2560 4 |
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87 | create_run 257 100 16 6 2560 6 |
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88 | create_run 257 100 16 8 2560 8 |
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89 | create_run 257 100 24 4 5760 4 |
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90 | ls -d run_* |
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91 | } |
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92 | |
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93 | function cmd_create_8km() |
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94 | { |
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95 | rm -rf run_* |
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96 | create_run 1025 20 32 1 2560 4 |
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97 | ls -d run_* |
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98 | } |
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99 | |
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100 | function cmd_submit() |
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101 | { |
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102 | for RUN in run_* ; do |
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103 | cd $RUN |
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104 | if [ -f already_done ]; then |
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105 | echo "$RUN has run already." |
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106 | else |
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107 | ccc_msub job.sh |
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108 | fi |
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109 | cd .. |
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110 | done |
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111 | } |
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112 | |
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113 | #------------------------------------- Reporting -------------------------------------- |
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114 | |
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115 | function get_troughput() |
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116 | { |
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117 | grep Throughput logs/gcm.log | tail -n 5 | awk '{print $12}' | sort -r | head -n 1 |
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118 | } |
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119 | |
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120 | function get_ms_step() |
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121 | { |
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122 | grep 'ms/step' logs/gcm.log | tail -n 5 | awk '{print $8}' | sort -r | head -n 1 |
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123 | } |
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124 | |
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125 | function get_frac() |
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126 | { |
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127 | grep $1 logs/gcm.log | grep -v DEFAULT | grep -v caldyn | grep -v nqdyn | tail -n 4 | head -n 1 | awk '{print $3}' |
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128 | } |
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129 | function cmd_stats() |
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130 | { |
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131 | echo RUN frac_dyn_adv frac_MPI Throughput ms/step |
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132 | for RUN in run_* ; do |
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133 | cd $RUN |
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134 | # pwd |
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135 | # ls logs/gcm.log |
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136 | frac_adv=$(get_frac adv) |
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137 | frac_dyn=$(get_frac dyn) |
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138 | frac_adv_MPI=$(get_frac adv_MPI) |
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139 | frac_dyn_MPI=$(get_frac dyn_MPI) |
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140 | # echo $frac_adv $frac_dyn $frac_adv_MPI $frac_dyn_MPI |
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141 | echo $RUN $(( frac_adv+frac_dyn )) $((frac_adv_MPI+frac_dyn_MPI)) $(get_troughput) $(get_ms_step) |
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142 | cd .. |
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143 | done |
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144 | } |
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145 | |
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146 | function MPI() |
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147 | { |
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148 | run=$1 |
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149 | cmd=$2 |
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150 | nprocs=$(echo $run | tr "_" ' ' | awk '{print $4'} ) |
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151 | nprocs=$(compute $nprocs) |
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152 | stats=$(grep MPI_$cmd $run/logs/gcm.log | tail -n 1) |
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153 | time=$(echo $stats | awk '{print $3}') |
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154 | count=$(echo $stats | awk '{print $4}') |
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155 | wall=$(echo $stats | awk '{print $5}') |
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156 | # echo $stats |
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157 | # echo $nprocs $time $count $wall >&2 |
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158 | # echo $run $cmd |
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159 | echo $run $cmd $(compute "$time/$nprocs") $((count/nprocs)) $wall |
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160 | } |
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161 | |
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162 | function compute() |
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163 | { |
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164 | bc <<< "scale=2 ; $1" |
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165 | } |
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166 | function cmd_MPI() |
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167 | { |
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168 | # MPI_Waitall MPI_Alltoall MPI_Allreduce MPI_Bcast MPI_Barrier MPI_Isend MPI_Comm_size MPI_Reduce MPI_Irecv MPI_Comm_rank MPI_Init MPI_Finalize |
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169 | echo '# [run] [func] [time] [count] <%wall>' |
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170 | for cmd in Alltoall Allreduce Bcast Waitall Barrier ; do |
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171 | for run in run_* ; do |
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172 | # echo $run $(grep MPI_$cmd $run/logs/gcm.log) |
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173 | MPI $run $cmd |
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174 | done |
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175 | done |
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176 | } |
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177 | function elapsed() |
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178 | { |
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179 | cd $1 |
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180 | useful=$(grep elapsed logs/gcm.log | awk '{print $4}') |
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181 | echo $useful |
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182 | hhmmss=$(grep icosa_gcm.exe DYN_bench*.o | awk '{print $7}') |
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183 | minutes=$(date +'%M' -d $hhmmss) |
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184 | seconds=$(date +'%S' -d $hhmmss) |
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185 | echo $(compute "$seconds+60*$minutes-$useful") |
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186 | cd .. |
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187 | } |
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188 | |
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189 | function cmd_elapsed() |
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190 | { |
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191 | for x in run_* ; do |
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192 | echo $x $(elapsed $x) |
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193 | done |
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194 | } |
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195 | |
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196 | #--------------------------------------------------------------------------------------- |
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197 | |
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198 | function cmd_clean() |
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199 | { |
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200 | rm -f $(find . -name restart.nc) |
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201 | } |
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202 | |
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203 | echo "Usage : benchmark.sh COMMAND" |
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204 | echo "Available commands : create_220km create_35km submit clean stats" |
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205 | echo "Your command : $1" |
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206 | |
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207 | cmd_$1 |
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