[501] | 1 | #!/bin/bash |
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| 2 | |
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[502] | 3 | # This script provides site-specific functions |
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| 4 | # called by the site-independent scripts |
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| 5 | # create_runs.sh and submit.sh |
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| 6 | |
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| 7 | # NB : we must the queue 'normal' because there seems to be a limit |
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| 8 | # on the number of jobs that can be submitted to queue 'test' |
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| 9 | |
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[501] | 10 | #----------------------------- split_XXX ---------------------------- |
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| 11 | |
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| 12 | function split_serial_40() { |
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| 13 | setvar nbp 41 nsplit_i 2 nsplit_j 2 |
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| 14 | } |
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| 15 | function split_mpi_40() { |
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| 16 | setvar nbp 41 nsplit_i 2 nsplit_j 2 |
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| 17 | } |
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| 18 | function split_mpi_80() { |
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| 19 | setvar nbp 81 nsplit_i 4 nsplit_j 2 |
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| 20 | } |
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| 21 | |
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[502] | 22 | #----------------- job submission ------------------ |
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| 23 | |
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| 24 | function submit_job_X64_CURIE() # $1=script $* = SLURM OPTIONS |
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| 25 | { |
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| 26 | TMP=$(mktemp) |
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| 27 | ccc_msub $1 > $TMP |
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| 28 | cat $TMP 1>&2 |
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| 29 | cat $TMP | awk '{print $NF }' |
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| 30 | rm -f $TMP |
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| 31 | } |
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| 32 | |
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[501] | 33 | #------------------------------ job_XXX ----------------------------- |
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| 34 | |
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| 35 | function job_serial() { # EXP_NAME |
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| 36 | job_X64_CURIE $1 1 "" |
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| 37 | } |
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| 38 | function job_serial_40() { # EXP_NAME |
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| 39 | job_serial $1 |
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| 40 | } |
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| 41 | |
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| 42 | function job_mpi() { #EXP_NAME NB_MPI |
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| 43 | job_X64_CURIE $1 $2 ccc_mprun |
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| 44 | } |
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| 45 | function job_mpi_40() { # EXP_NAME |
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| 46 | job_mpi $1 40 |
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| 47 | } |
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| 48 | function job_mpi_80() { # EXP_NAME |
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| 49 | job_mpi $1 80 |
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| 50 | } |
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| 51 | |
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| 52 | function job_X64_CURIE() { # EXP_NAME MPI_TASKS MPIRUN |
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| 53 | cat <<EOF |
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| 54 | #!/bin/bash |
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| 55 | ## Request name |
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| 56 | #MSUB -r $1 |
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| 57 | #MSUB -q standard |
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| 58 | #MSUB -A gen7548 |
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| 59 | #MSUB -x |
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| 60 | ## Number of tasks (=MPI processes) to use |
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| 61 | #MSUB -n $2 |
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| 62 | ## Elapsed time limit in seconds |
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| 63 | #MSUB -T 600 |
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| 64 | ## Quality of Service required (long [3 days], normal [1 day], test [30 min]) |
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[502] | 65 | #MSUB -Q normal |
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[501] | 66 | |
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| 67 | export OMP_NUM_THREADS=1 |
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| 68 | cd \${BRIDGE_MSUB_PWD} |
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| 69 | |
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| 70 | module purge |
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| 71 | module load licsrv/intel |
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| 72 | module load c/intel/14.0.3.174 |
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| 73 | module load c++/intel/14.0.3.174 |
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| 74 | module load fortran/intel/14.0.3.174 |
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| 75 | module load mkl/14.0.3.174 |
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| 76 | module load idb/14.0.3.174 |
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| 77 | module load intel/14.0.3.174 |
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| 78 | module load mpi/bullxmpi/1.2.8.4 |
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| 79 | module load netcdf/4.3.3.1_hdf5_parallel |
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| 80 | |
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| 81 | rm -rf gcm.log logs *.nc netcdf |
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| 82 | date > gcm.log |
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| 83 | ulimit -s unlimited |
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| 84 | $3 ./gcm.exe >> gcm.log |
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| 85 | date >> gcm.log |
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| 86 | |
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| 87 | mkdir -p netcdf |
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| 88 | cp gcm.log *.def netcdf |
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| 89 | mv *.nc netcdf |
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| 90 | |
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| 91 | mkdir -p logs |
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| 92 | cp *.xml logs |
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| 93 | mv xios_client_*.err xios_client_*.out gcm.log logs |
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| 94 | |
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| 95 | EOF |
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| 96 | } |
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[502] | 97 | |
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| 98 | #------------------------------ post-processing job ----------------------------- |
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| 99 | |
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| 100 | function job_post_X64_CURIE() # LIST |
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| 101 | { |
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| 102 | DEPLIST=afterany |
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| 103 | for ID in $* ; do |
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| 104 | DEPLIST="$DEPLIST:$ID" |
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| 105 | done |
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| 106 | cat <<EOF |
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| 107 | #!/bin/bash |
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| 108 | ## Request name |
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| 109 | #MSUB -r testing |
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| 110 | #MSUB -q standard |
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| 111 | #MSUB -A gen7548 |
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| 112 | #MSUB -E "--dependency=$DEPLIST" |
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| 113 | ## Number of tasks (=MPI processes) to use |
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| 114 | #MSUB -n 1 |
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| 115 | ## Elapsed time limit in seconds |
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| 116 | #MSUB -T 600 |
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| 117 | ## Quality of Service required (long [3 days], normal [1 day], test [30 min]) |
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| 118 | #MSUB -Q normal |
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| 119 | |
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| 120 | export OMP_NUM_THREADS=1 |
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| 121 | # this script is submitted from $ROOT/logs |
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| 122 | cd \${BRIDGE_MSUB_PWD}/.. |
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| 123 | |
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| 124 | module purge |
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| 125 | module load licsrv/intel |
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| 126 | module load c/intel/14.0.3.174 |
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| 127 | module load c++/intel/14.0.3.174 |
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| 128 | module load fortran/intel/14.0.3.174 |
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| 129 | module load mkl/14.0.3.174 |
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| 130 | module load idb/14.0.3.174 |
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| 131 | module load intel/14.0.3.174 |
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| 132 | module load mpi/bullxmpi/1.2.8.4 |
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| 133 | module load netcdf/4.3.3.1_hdf5_parallel |
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| 134 | module load python |
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| 135 | |
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| 136 | bash/post.sh |
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| 137 | EOF |
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| 138 | } |
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