[615] | 1 | #!/bin/bash |
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| 2 | |
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| 3 | function log() |
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| 4 | { |
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| 5 | echo $* |
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| 6 | $* |
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| 7 | } |
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| 8 | |
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| 9 | function full_dir() |
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| 10 | { |
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| 11 | (cd -P $1 ; pwd) |
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| 12 | } |
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| 13 | |
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[721] | 14 | function cmd_clean() # cleanup, invoked by : './make_python clean' |
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| 15 | { |
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| 16 | rm -f lib/*.so lib/dynamico |
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| 17 | cd $KERNELS/src |
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| 18 | rm -rf *.o *.so build/ |
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| 19 | } |
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| 20 | |
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[615] | 21 | #--------------- Generate kernels, invoked by : './make_python kernels' --------------- |
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| 22 | |
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| 23 | function update() |
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| 24 | { |
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[721] | 25 | diff $2 $1 || log cp -pr $1 $2 |
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[615] | 26 | } |
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| 27 | |
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[721] | 28 | function update_kernels() |
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[626] | 29 | { |
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[721] | 30 | cd $KERNELS/src/$1 |
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| 31 | for x in *.k90 ; do |
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| 32 | update "$x" "$DYNAMICO_ROOT/src/$2/$x" |
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| 33 | done |
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[747] | 34 | |
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[626] | 35 | } |
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| 36 | |
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[615] | 37 | function cmd_kernels() # this function is invoked by : './make_python kernels' |
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| 38 | { |
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[747] | 39 | cmd_clean |
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[615] | 40 | cd $KERNELS |
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[721] | 41 | ./codegen hexagonal hex_master unstructured |
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| 42 | update_kernels hexagonal kernels_hex |
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| 43 | update_kernels hex_master kernels_hex_master |
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| 44 | update_kernels unstructured kernels_unst |
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| 45 | # make sure that ./rebuild recompiles dynamics |
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[615] | 46 | cd $DYNAMICO_ROOT |
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[654] | 47 | touch src/dynamics/*.F90 src/diagnostics/*.F90 src/transport/*.F90 src/unstructured/*.F90 |
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[615] | 48 | } |
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| 49 | |
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| 50 | #------------------ Default action , invoked by : './make_python' -------------------- |
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| 51 | |
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| 52 | function make_so() |
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| 53 | { |
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| 54 | ARLIB=$1 |
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| 55 | SOLIB=$2 |
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[621] | 56 | |
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[615] | 57 | if [[ $ARLIB -nt $SOLIB ]]; then |
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| 58 | echo $ARLIB is newer than $SOLIB |
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[621] | 59 | rm -f tmp.a |
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| 60 | cp $ARLIB tmp.a |
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[626] | 61 | if [[ "$4" != "" ]] ; then ar vd tmp.a $4 ; fi |
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| 62 | if [[ "$5" != "" ]] ; then ar vr tmp.a $5 ; fi |
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[621] | 63 | log $LINK $SOFLAGS $WHOLE_ARCHIVE tmp.a $NO_WHOLE_ARCHIVE $3 -o $SOLIB |
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| 64 | rm -f tmp.a |
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[615] | 65 | $LDD $SOLIB |
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| 66 | fi |
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| 67 | } |
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| 68 | |
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| 69 | |
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| 70 | function cmd_() |
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| 71 | { |
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[626] | 72 | echo "XIOS_ROOTDIR : $XIOS_ROOTDIR" |
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[621] | 73 | MISSING="" |
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| 74 | for module in netCDF4 jinja2 mpi4py; do |
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| 75 | echo "import $module" |
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| 76 | python -c "import $module" || MISSING="$MISSING $module" |
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| 77 | done |
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| 78 | if [[ "$MISSING" == "" ]] ; then |
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| 79 | echo "All required Python modules seem present." |
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| 80 | else |
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| 81 | echo "Missing/dysfunctional python modules : $MISSING" |
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| 82 | echo "Please fix your Python configuration" |
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| 83 | exit |
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| 84 | fi |
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| 85 | |
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| 86 | log mpicc -c -std=c99 -fPIC $PARMETIS_CFLAGS Python/src/partition.c -o obj/partition.o |
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[705] | 87 | make_so $XIOS_ROOTDIR/lib/libxios.a $LIBDIR/libxios.so "$NETCDF_LDFLAGS -lstdc++" |
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[621] | 88 | make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios $KERNELS_LDFLAGS" "physics_external_mod.o physics_mod.o timeloop_gcm_mod.o icosa_init_mod.o" obj/partition.o |
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[615] | 89 | |
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| 90 | # Cythonize Python modules |
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| 91 | cd $DYNAMICO_ROOT/Python/src |
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[641] | 92 | NUMPY=$(python -c 'import numpy as np ; print np.get_include()') |
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[621] | 93 | CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR -licosa $KERNELS_LDFLAGS" |
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[641] | 94 | LDSHARED="$LINK" CFLAGS="-fno-strict-aliasing -O2 -I$NUMPY" LDFLAGS="$CYTHONFLAGS" log python setup.py build_ext --inplace || exit |
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[662] | 95 | |
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[621] | 96 | cp -fpr $DYNAMICO_ROOT/Python/dynamico $DYNAMICO_ROOT/lib |
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| 97 | cp -fp *.so $DYNAMICO_ROOT/lib/dynamico/ |
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| 98 | cd $DYNAMICO_ROOT |
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| 99 | |
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[694] | 100 | for module in cxios unstructured meshes dyn time_step DCMIP; do |
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[621] | 101 | echo "from dynamico import $module" |
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[662] | 102 | LD_PRELOAD=$PYTHON_PRELOAD python -c "from dynamico import $module" |
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[621] | 103 | done |
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[615] | 104 | } |
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| 105 | |
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| 106 | #------------------------- script starts here ------------------------ |
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| 107 | |
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| 108 | DYNAMICO_ROOT=$PWD |
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| 109 | LIBDIR=$DYNAMICO_ROOT/lib |
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| 110 | KERNELS=$DYNAMICO_ROOT/Python |
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| 111 | |
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| 112 | . arch.env |
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| 113 | . arch.path |
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| 114 | |
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| 115 | echo "Selected architecture : $CURRENT_ARCH" |
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| 116 | |
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| 117 | if [[ "$CURRENT_ARCH" == "" ]] ; then echo "Current architecture undefined or unsupported" ; exit ; fi |
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| 118 | |
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[705] | 119 | cd Python/env ; . ${CURRENT_ARCH}.env ; cd $DYNAMICO_ROOT |
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[615] | 120 | |
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[721] | 121 | time cmd_$1 |
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